miRNA display CGI


Results 61 - 80 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 50769 0.75 0.312371
Target:  5'- gGCGGCGGCgaCGGCGCGucucGGGCGGCGcCu -3'
miRNA:   3'- -CGCCGCUG--GCCGCGCc---UCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 51064 0.71 0.515833
Target:  5'- gGCGGCGACggcgaccuccgagcgUGGCGCGcucGGAaaaGACGACc -3'
miRNA:   3'- -CGCCGCUG---------------GCCGCGCc--UCUg--CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 53257 0.67 0.738282
Target:  5'- cCGGCGucGCC-GCGCGacaacGGGGCGGCGAg -3'
miRNA:   3'- cGCCGC--UGGcCGCGC-----CUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 53307 0.73 0.408607
Target:  5'- aGCGGuCGGCCGGCGCcGcGAGAuCGGCu-- -3'
miRNA:   3'- -CGCC-GCUGGCCGCG-C-CUCU-GCUGcug -5'
10793 3' -61.3 NC_002794.1 + 53540 0.69 0.615468
Target:  5'- cGCGGCGGCCGcacagccCGUGGAcguaGACGGCc -3'
miRNA:   3'- -CGCCGCUGGCc------GCGCCUcug-CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 53761 0.69 0.605911
Target:  5'- cGCcGCuGCCGGCgGCGG-GACGcccGCGACg -3'
miRNA:   3'- -CGcCGcUGGCCG-CGCCuCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 53833 0.69 0.586853
Target:  5'- gGCGGgagccuCGACgGGCgucucgGCGGGGuucuCGACGACg -3'
miRNA:   3'- -CGCC------GCUGgCCG------CGCCUCu---GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 54459 0.69 0.59637
Target:  5'- gGC-GCGACCGGacaccuUGGGGAUGAUGGCg -3'
miRNA:   3'- -CGcCGCUGGCCgc----GCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 54841 0.66 0.771445
Target:  5'- gGCGGCacccaacgcccguaGGCCGGCGCGG-GcCGcCGcaGCg -3'
miRNA:   3'- -CGCCG--------------CUGGCCGCGCCuCuGCuGC--UG- -5'
10793 3' -61.3 NC_002794.1 + 54978 0.67 0.729113
Target:  5'- uGCa-CGACCcGcCGCGGcGACGGCGGCg -3'
miRNA:   3'- -CGccGCUGGcC-GCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55191 0.79 0.166905
Target:  5'- gGCGGCGgcccuaacACCGGCGCGGcGGAggccggcggucgagcCGACGACg -3'
miRNA:   3'- -CGCCGC--------UGGCCGCGCC-UCU---------------GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55278 0.75 0.292756
Target:  5'- gGCGGCGGuggCGGCGaCGaGGGCGGCGGCg -3'
miRNA:   3'- -CGCCGCUg--GCCGC-GCcUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55308 0.68 0.691778
Target:  5'- gGCGucGCGGCgGGCGCGGGcGGCuuccGAgGACc -3'
miRNA:   3'- -CGC--CGCUGgCCGCGCCU-CUG----CUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 55357 0.67 0.74737
Target:  5'- -aGGCGGCCgaGGCgGCcGAGGCGGCcgaGGCg -3'
miRNA:   3'- cgCCGCUGG--CCG-CGcCUCUGCUG---CUG- -5'
10793 3' -61.3 NC_002794.1 + 55402 0.68 0.672819
Target:  5'- -aGGCGGCCgaGGCgGCcGAGGCGAcccCGGCg -3'
miRNA:   3'- cgCCGCUGG--CCG-CGcCUCUGCU---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 55800 0.68 0.653745
Target:  5'- aGCGaGCGcagcGCCgGGCGCGGGcgcgcgcuGAUGGCGAa -3'
miRNA:   3'- -CGC-CGC----UGG-CCGCGCCU--------CUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 56334 0.69 0.597323
Target:  5'- cCGGCGACgCGGCGaagagcagcucgaaGAGGCGGuCGACg -3'
miRNA:   3'- cGCCGCUG-GCCGCgc------------CUCUGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 56589 0.69 0.577364
Target:  5'- cGCGGCGcccgccGCCGGCcuccucaUGGAGAacugGACGGCg -3'
miRNA:   3'- -CGCCGC------UGGCCGc------GCCUCUg---CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 58059 0.72 0.424973
Target:  5'- uCGGCGGCCccGGCgGCGGcgGGACgGGCGGCc -3'
miRNA:   3'- cGCCGCUGG--CCG-CGCC--UCUG-CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 58968 0.66 0.782763
Target:  5'- cGUGGaGGCCGaGCGCcugcGCGACGACg -3'
miRNA:   3'- -CGCCgCUGGC-CGCGccucUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.