miRNA display CGI


Results 81 - 100 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 60632 0.69 0.586853
Target:  5'- -gGGCGGacCCGGCGcCGGcGGCGcCGGCc -3'
miRNA:   3'- cgCCGCU--GGCCGC-GCCuCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 61532 0.75 0.299185
Target:  5'- cCGGCGGCCGcCGCGaAGACGACGcCg -3'
miRNA:   3'- cGCCGCUGGCcGCGCcUCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 61831 0.69 0.604956
Target:  5'- cCGGCGGCCGGCgucacuccgcuccGCGccccauGGACGACGcCg -3'
miRNA:   3'- cGCCGCUGGCCG-------------CGCc-----UCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 61895 0.66 0.79978
Target:  5'- cGCGGCGA---GCGCGGcGAgCGcaGCGACg -3'
miRNA:   3'- -CGCCGCUggcCGCGCCuCU-GC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 62069 0.8 0.157643
Target:  5'- gGCGGCGacGCCGGCgGCGacGACGGCGACg -3'
miRNA:   3'- -CGCCGC--UGGCCG-CGCcuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 62454 0.68 0.68042
Target:  5'- aCGGCGAgUucguccuccucgaGGCGCGccucgacgagcgcGAGugGACGGCg -3'
miRNA:   3'- cGCCGCUgG-------------CCGCGC-------------CUCugCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 62507 0.67 0.710562
Target:  5'- gGCGGCGccGCCGGCGCcuccgcccaccGuGACGAagagccCGACg -3'
miRNA:   3'- -CGCCGC--UGGCCGCGc----------CuCUGCU------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 63478 0.7 0.530536
Target:  5'- gGCGGCGGCCGcCGUcGAcGACGccGCGGCg -3'
miRNA:   3'- -CGCCGCUGGCcGCGcCU-CUGC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 63668 0.71 0.503104
Target:  5'- uCGGaCGACgagcgCGGcCGCGGcGACGACGAUg -3'
miRNA:   3'- cGCC-GCUG-----GCC-GCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64016 0.66 0.765274
Target:  5'- --uGCGGCUGGCGauguCGGAgcuccaGugGACGGCg -3'
miRNA:   3'- cgcCGCUGGCCGC----GCCU------CugCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64109 0.67 0.710562
Target:  5'- --cGCGACCGGCGCGucugcacGCGGuCGACg -3'
miRNA:   3'- cgcCGCUGGCCGCGCcuc----UGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 64694 0.77 0.218827
Target:  5'- aCGGCGAggCGaGCGCGGAcgagGACGACGACg -3'
miRNA:   3'- cGCCGCUg-GC-CGCGCCU----CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64822 0.79 0.177487
Target:  5'- gGCGGCGAgCCGGCGCcGAcGACcgGACGGCg -3'
miRNA:   3'- -CGCCGCU-GGCCGCGcCU-CUG--CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65171 0.68 0.663293
Target:  5'- cGUGGCgccgaGACCGGCG-GGuGcCGGCGAg -3'
miRNA:   3'- -CGCCG-----CUGGCCGCgCCuCuGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 65250 0.75 0.292756
Target:  5'- gGCGGCGAuCCGGCcucGCcGAG-CGGCGGCg -3'
miRNA:   3'- -CGCCGCU-GGCCG---CGcCUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65361 0.66 0.75637
Target:  5'- -gGGCG-CCGGCGCccuGACGccacACGGCg -3'
miRNA:   3'- cgCCGCuGGCCGCGccuCUGC----UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65933 0.69 0.613556
Target:  5'- gGCGGUGGCguCGGCgGCGGuaucgucgcgaGCGGCGGCg -3'
miRNA:   3'- -CGCCGCUG--GCCG-CGCCuc---------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65999 0.68 0.653745
Target:  5'- gGCGGUGAucCCGGCaCcGAGGCGGCcGCg -3'
miRNA:   3'- -CGCCGCU--GGCCGcGcCUCUGCUGcUG- -5'
10793 3' -61.3 NC_002794.1 + 66252 0.67 0.71987
Target:  5'- uGCGGCGAcccguCCGGCcccguagacgaGCGGAGGgGucCGAg -3'
miRNA:   3'- -CGCCGCU-----GGCCG-----------CGCCUCUgCu-GCUg -5'
10793 3' -61.3 NC_002794.1 + 66722 0.68 0.663293
Target:  5'- aCGGCcGCCGccaccGCcgGCGGuGGCGGCGGCg -3'
miRNA:   3'- cGCCGcUGGC-----CG--CGCCuCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.