miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 195613 0.71 0.467532
Target:  5'- cGCuGGCGuCCGGCccaaaCGGccGGCGACGACg -3'
miRNA:   3'- -CG-CCGCuGGCCGc----GCCu-CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 195238 0.67 0.700256
Target:  5'- cGCGGCGucACCaGCaccgaccaccccgGCGGGGACugcaGCGACa -3'
miRNA:   3'- -CGCCGC--UGGcCG-------------CGCCUCUGc---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 194115 0.66 0.774074
Target:  5'- uGCGGC-ACCGcGCGCacggcuGAGGCaGCGGCc -3'
miRNA:   3'- -CGCCGcUGGC-CGCGc-----CUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 192237 0.66 0.792185
Target:  5'- uCGGCGcuGCCgucgccgacGGCGCGGuucgcucgucucucGCGACGACa -3'
miRNA:   3'- cGCCGC--UGG---------CCGCGCCuc------------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 192142 0.73 0.369464
Target:  5'- uGCuGCuGCCGGCGCGGucGCGGCGGa -3'
miRNA:   3'- -CGcCGcUGGCCGCGCCucUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 192013 0.71 0.467532
Target:  5'- gGCGGUGGCCgcGGCugcuguuucuGUGGcGGCGGCGGCu -3'
miRNA:   3'- -CGCCGCUGG--CCG----------CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 191858 0.79 0.177069
Target:  5'- cGUGGUcgugaaaGGCCGGCgGCGGAGGgGGCGGCg -3'
miRNA:   3'- -CGCCG-------CUGGCCG-CGCCUCUgCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 191669 0.74 0.354542
Target:  5'- aCGGCG-CCGGCaGCGGcGGCGGCGuGCc -3'
miRNA:   3'- cGCCGCuGGCCG-CGCCuCUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 190762 0.69 0.63461
Target:  5'- gGCGGCGGCCGcGCGUcccGGuAGAUGAacuCGGu -3'
miRNA:   3'- -CGCCGCUGGC-CGCG---CC-UCUGCU---GCUg -5'
10793 3' -61.3 NC_002794.1 + 189842 0.7 0.539803
Target:  5'- aGCGGgGuCuCGGcCGCGGAGcCGuCGGCg -3'
miRNA:   3'- -CGCCgCuG-GCC-GCGCCUCuGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 188344 0.66 0.765274
Target:  5'- gGCGGCG-CCGucGCGCccguccGGccGGCGGCGGCc -3'
miRNA:   3'- -CGCCGCuGGC--CGCG------CCu-CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 188243 0.69 0.577364
Target:  5'- uCGuCGACCGGCgGCGGcGGCGguaGCGGCg -3'
miRNA:   3'- cGCcGCUGGCCG-CGCCuCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 187464 0.66 0.791334
Target:  5'- uCGGCGucGCuCGGCGCGcgccGGGcCGAgGACg -3'
miRNA:   3'- cGCCGC--UG-GCCGCGC----CUCuGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 186301 0.68 0.686106
Target:  5'- -aGGCGGCCggucgccgcGGCGCGcucguccuccaacacGAucGACGGCGGCg -3'
miRNA:   3'- cgCCGCUGG---------CCGCGC---------------CU--CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 185769 0.73 0.403774
Target:  5'- cGCGGCcgcccgucacacgucGGCCGGCGCGGGGACccacauCGcCg -3'
miRNA:   3'- -CGCCG---------------CUGGCCGCGCCUCUGcu----GCuG- -5'
10793 3' -61.3 NC_002794.1 + 185476 0.68 0.653745
Target:  5'- gGCGGCGGCCgcGGCGaGGGGACcGCc-- -3'
miRNA:   3'- -CGCCGCUGG--CCGCgCCUCUGcUGcug -5'
10793 3' -61.3 NC_002794.1 + 185178 0.73 0.408607
Target:  5'- cGCGGCGcggUCGGCGCGGucGGCGcggucaucGCGGCu -3'
miRNA:   3'- -CGCCGCu--GGCCGCGCCu-CUGC--------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184623 0.66 0.79978
Target:  5'- aGCGGCagcguccacGAUCGGCGUcGcGuCGGCGGCg -3'
miRNA:   3'- -CGCCG---------CUGGCCGCGcCuCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184585 0.72 0.424973
Target:  5'- gGCGGCGGCCacGCGCGGccGCGGgauCGGCa -3'
miRNA:   3'- -CGCCGCUGGc-CGCGCCucUGCU---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 184507 0.73 0.369464
Target:  5'- gGCGGCGcgggccCCGcGCGCGGcgcGGGCGACGcCg -3'
miRNA:   3'- -CGCCGCu-----GGC-CGCGCC---UCUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.