miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 184365 0.66 0.774074
Target:  5'- aGCGGCGcucCCaGCaGCGGAGGCaGuCGAa -3'
miRNA:   3'- -CGCCGCu--GGcCG-CGCCUCUG-CuGCUg -5'
10793 3' -61.3 NC_002794.1 + 184063 0.66 0.766159
Target:  5'- cGCGGCGAagcggcacgcgcccaCGGUguaGCGGcAGAaCGGCGAa -3'
miRNA:   3'- -CGCCGCUg--------------GCCG---CGCC-UCU-GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 183613 0.66 0.75637
Target:  5'- cGCGcGCGGCCGGCGCccccGCGccccCGACu -3'
miRNA:   3'- -CGC-CGCUGGCCGCGccucUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 182964 0.71 0.476307
Target:  5'- aCGGCGGCCGGCuccuCGuucGAGcCGACGGCc -3'
miRNA:   3'- cGCCGCUGGCCGc---GC---CUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 182553 0.67 0.701195
Target:  5'- cGCcGCGGCCGGCaccgucacCGGgaucuccgugcGGGCGACGAUg -3'
miRNA:   3'- -CGcCGCUGGCCGc-------GCC-----------UCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 182200 0.66 0.79978
Target:  5'- uCGGCG-CCGGCGUcgcgccacGGGGcucCGACGGu -3'
miRNA:   3'- cGCCGCuGGCCGCG--------CCUCu--GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 181897 0.66 0.777564
Target:  5'- -aGGCGACa-GCGCGG-GucguacaccacccgcGCGACGGCc -3'
miRNA:   3'- cgCCGCUGgcCGCGCCuC---------------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 181744 0.66 0.774074
Target:  5'- cGCGaGCGGCCGGCcagcccGCuGAcGcCGAUGGCg -3'
miRNA:   3'- -CGC-CGCUGGCCG------CGcCU-CuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 180915 0.67 0.704948
Target:  5'- cGCGGUcucGCCGGCGCcgucGGAGgucggucucgcguccGCGGcCGACg -3'
miRNA:   3'- -CGCCGc--UGGCCGCG----CCUC---------------UGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 180873 0.68 0.672819
Target:  5'- gGCGGCGGauCCGGCGCGcccGGucuCGGCcGCg -3'
miRNA:   3'- -CGCCGCU--GGCCGCGCc--UCu--GCUGcUG- -5'
10793 3' -61.3 NC_002794.1 + 180694 0.67 0.701195
Target:  5'- cCGGCGcCCGGCGgGcGGACcAUGGCu -3'
miRNA:   3'- cGCCGCuGGCCGCgCcUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 180626 0.69 0.625037
Target:  5'- aCGGCGGCCcacccGCGCuccAGACGACGAg -3'
miRNA:   3'- cGCCGCUGGc----CGCGcc-UCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 180365 0.73 0.400573
Target:  5'- -aGGaCGACCGGCGCGaGGACGcugcCGGCc -3'
miRNA:   3'- cgCC-GCUGGCCGCGCcUCUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 180306 0.72 0.433301
Target:  5'- aCGcCGGCCGGCGCGaccAGACGAUGAa -3'
miRNA:   3'- cGCcGCUGGCCGCGCc--UCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 179990 0.74 0.347242
Target:  5'- gGCGGUGGCCGcGacgGCGGGcccggccacGACGACGGCc -3'
miRNA:   3'- -CGCCGCUGGC-Cg--CGCCU---------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 179684 0.77 0.234336
Target:  5'- gGCGGCGACgguggcggCGGCGaCGGuGGCGACGcCg -3'
miRNA:   3'- -CGCCGCUG--------GCCGC-GCCuCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 179428 0.78 0.204203
Target:  5'- -gGGCccCgGGCGCGGAGGCGugGACc -3'
miRNA:   3'- cgCCGcuGgCCGCGCCUCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 178341 0.68 0.653745
Target:  5'- cUGGUGACC-GCGUGGcGACGAUGuACc -3'
miRNA:   3'- cGCCGCUGGcCGCGCCuCUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 178264 0.69 0.625037
Target:  5'- aGCGGgcUGACCGGaGaCGGGGucggucgaGCGACGGCu -3'
miRNA:   3'- -CGCC--GCUGGCCgC-GCCUC--------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 177718 0.67 0.738282
Target:  5'- aCGGCGGuccaCGGgGCGGAucCGAcCGACu -3'
miRNA:   3'- cGCCGCUg---GCCgCGCCUcuGCU-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.