miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 160322 0.66 0.765274
Target:  5'- uUGG-GGCUGgaGCGCGGAugGGCGACGAa -3'
miRNA:   3'- cGCCgCUGGC--CGCGCCU--CUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 157851 0.71 0.494096
Target:  5'- aGCGGauaaucCGGCCauguucguGGCGCGGGGuuUGACGGCg -3'
miRNA:   3'- -CGCC------GCUGG--------CCGCGCCUCu-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 156457 0.69 0.577364
Target:  5'- -aGGCGGuuGGUuaGGGGGCggggGACGACg -3'
miRNA:   3'- cgCCGCUggCCGcgCCUCUG----CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 156398 0.67 0.74737
Target:  5'- -aGaGCGGCCGGCGCcGcGGCcGCGGCc -3'
miRNA:   3'- cgC-CGCUGGCCGCGcCuCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 154346 0.69 0.604956
Target:  5'- uGCcGCGGCCGagcucccGCGCGGuccaggccgcGGCGGCGGCg -3'
miRNA:   3'- -CGcCGCUGGC-------CGCGCCu---------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 154204 0.7 0.539803
Target:  5'- cUGGagacGCUGGCGCGGcaAGGCGugGACc -3'
miRNA:   3'- cGCCgc--UGGCCGCGCC--UCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 153690 0.69 0.605911
Target:  5'- aCGcGCGACCGGCGacCGGuuuagcGACcGCGACg -3'
miRNA:   3'- cGC-CGCUGGCCGC--GCCu-----CUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 153412 0.76 0.262226
Target:  5'- cGCGaGCG-CCGcGCGCGGAGccgagcuggGCGugGACg -3'
miRNA:   3'- -CGC-CGCuGGC-CGCGCCUC---------UGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 153013 0.74 0.347242
Target:  5'- aCGGCgGACUgGGCGaCGGGGACGggaACGACg -3'
miRNA:   3'- cGCCG-CUGG-CCGC-GCCUCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 152583 0.73 0.391852
Target:  5'- cGCGGCGGCCgccacgucccugcGGCGCGGGcccaaGCGGCG-Ca -3'
miRNA:   3'- -CGCCGCUGG-------------CCGCGCCUc----UGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 149985 0.68 0.672819
Target:  5'- cCGGCGGCCGcuaucugccGCGCuGcuACGACGGCc -3'
miRNA:   3'- cGCCGCUGGC---------CGCGcCucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 149823 0.71 0.467532
Target:  5'- uCGGgGACCcgaGGacggGCGGGGACGAgGACg -3'
miRNA:   3'- cGCCgCUGG---CCg---CGCCUCUGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 149684 0.67 0.701195
Target:  5'- cGCGcuCGACUGGcCGCGGGGGCcgccuGGCGGg -3'
miRNA:   3'- -CGCc-GCUGGCC-GCGCCUCUG-----CUGCUg -5'
10793 3' -61.3 NC_002794.1 + 149334 0.76 0.273511
Target:  5'- cCGGaccgaacCGGCCGGgguCGCGGGGGCGugGACg -3'
miRNA:   3'- cGCC-------GCUGGCC---GCGCCUCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 148136 0.7 0.521328
Target:  5'- cGCGGgGccGCCGGgGCGaGGGCGgucGCGACg -3'
miRNA:   3'- -CGCCgC--UGGCCgCGCcUCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 147782 0.72 0.458841
Target:  5'- cGCGGCGACCcugGGCGUcucGGAGcUGACG-Cu -3'
miRNA:   3'- -CGCCGCUGG---CCGCG---CCUCuGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 147104 0.66 0.75637
Target:  5'- uCGGCGcCCGGCccaaGGAcgaaGACGuCGACg -3'
miRNA:   3'- cGCCGCuGGCCGcg--CCU----CUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 147012 0.71 0.467532
Target:  5'- gGCGGCGgccGCCGGCGCucGGucuaaGGACGAagccguCGGCg -3'
miRNA:   3'- -CGCCGC---UGGCCGCG--CC-----UCUGCU------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 146906 0.7 0.521328
Target:  5'- -aGGCGcuCgGGCGCGGGGAuCGGCcgGACg -3'
miRNA:   3'- cgCCGCu-GgCCGCGCCUCU-GCUG--CUG- -5'
10793 3' -61.3 NC_002794.1 + 146617 0.67 0.738282
Target:  5'- gGCGGCGAggacgucgaaGGCGguacCGGGaGCGGCGACg -3'
miRNA:   3'- -CGCCGCUgg--------CCGC----GCCUcUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.