miRNA display CGI


Results 61 - 80 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 146001 0.69 0.586853
Target:  5'- aCGGCcGCCGGgGcCGGAGACGcCGuCc -3'
miRNA:   3'- cGCCGcUGGCCgC-GCCUCUGCuGCuG- -5'
10793 3' -61.3 NC_002794.1 + 145873 0.69 0.605911
Target:  5'- gGCcGCGACCGGacCGCGaGAaGCGGCGAg -3'
miRNA:   3'- -CGcCGCUGGCC--GCGC-CUcUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 145823 0.72 0.424973
Target:  5'- gGCGGCGAgCCGaGCGCGucGACGGucgccacgcuCGACg -3'
miRNA:   3'- -CGCCGCU-GGC-CGCGCcuCUGCU----------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 145780 0.73 0.38481
Target:  5'- cGCGGagucgucccCGGCCGGCuCGGAcGACGACGcCg -3'
miRNA:   3'- -CGCC---------GCUGGCCGcGCCU-CUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 145719 0.81 0.126922
Target:  5'- aCGGgGAUCgGGCGCuGGAGGCGGCGGCg -3'
miRNA:   3'- cGCCgCUGG-CCGCG-CCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145589 0.85 0.070103
Target:  5'- aGCGGCGGCCGGCucccGCGGAGucgggcGCGACGAg -3'
miRNA:   3'- -CGCCGCUGGCCG----CGCCUC------UGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 145554 0.73 0.400573
Target:  5'- aGCGGCccGACCGGUucGCGGAcGAgCGcCGACg -3'
miRNA:   3'- -CGCCG--CUGGCCG--CGCCU-CU-GCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145367 0.66 0.788776
Target:  5'- uGUGGUcACCGG-GCGGAGACGcuccgcucgguggcGCGcCg -3'
miRNA:   3'- -CGCCGcUGGCCgCGCCUCUGC--------------UGCuG- -5'
10793 3' -61.3 NC_002794.1 + 145324 0.66 0.765274
Target:  5'- cGCGGCGGgCGGCGCucGGGCccgaGCGGg -3'
miRNA:   3'- -CGCCGCUgGCCGCGccUCUGc---UGCUg -5'
10793 3' -61.3 NC_002794.1 + 143400 0.67 0.71987
Target:  5'- uGCuGCucGACCGGCGCGGgccGGGCGAaGGu -3'
miRNA:   3'- -CGcCG--CUGGCCGCGCC---UCUGCUgCUg -5'
10793 3' -61.3 NC_002794.1 + 143074 0.67 0.71987
Target:  5'- cGCGGCGGCagaCGuaGUGGAGguuGCG-CGGCg -3'
miRNA:   3'- -CGCCGCUG---GCcgCGCCUC---UGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 142582 0.7 0.530536
Target:  5'- aGC-GCGAUgGGCGCgcccugGGGGAUGACGAg -3'
miRNA:   3'- -CGcCGCUGgCCGCG------CCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 142386 0.71 0.493199
Target:  5'- aGCGGCGGagaCGGCggugcagGCGGcGuCGGCGGCg -3'
miRNA:   3'- -CGCCGCUg--GCCG-------CGCCuCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 142350 0.8 0.14672
Target:  5'- gGCGGCGGa-GGCgGCGGAGGCGGCGGa -3'
miRNA:   3'- -CGCCGCUggCCG-CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 142320 0.84 0.079448
Target:  5'- gGCGGCGGCgcaGGCgGCGGAGGCGGCGGa -3'
miRNA:   3'- -CGCCGCUGg--CCG-CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 142212 0.8 0.150282
Target:  5'- gGCGGCGGCagcggCGGUGCGGGGAgCGGCGGa -3'
miRNA:   3'- -CGCCGCUG-----GCCGCGCCUCU-GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 142131 0.75 0.299185
Target:  5'- gGCGGcCGACCgccgGGUcacgGCGGAGGCGGCGGu -3'
miRNA:   3'- -CGCC-GCUGG----CCG----CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 141947 0.67 0.729113
Target:  5'- gGCGGCGACCcguuggacGGC-CGG-GAUGAuCGAg -3'
miRNA:   3'- -CGCCGCUGG--------CCGcGCCuCUGCU-GCUg -5'
10793 3' -61.3 NC_002794.1 + 141801 0.67 0.701195
Target:  5'- cGCGGguCGGCCucGGacaGcCGGuuGGACGACGACg -3'
miRNA:   3'- -CGCC--GCUGG--CCg--C-GCC--UCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 141657 0.69 0.625037
Target:  5'- cGCGGCcGCCGGCGgGucGAG-CGAaGACg -3'
miRNA:   3'- -CGCCGcUGGCCGCgC--CUCuGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.