miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 113538 0.66 0.79978
Target:  5'- uCGGCGucGCCGGCcCGGAGcagGCGcCGGa -3'
miRNA:   3'- cGCCGC--UGGCCGcGCCUC---UGCuGCUg -5'
10793 3' -61.3 NC_002794.1 + 95021 0.66 0.79978
Target:  5'- gGCGGCuGugCGGCaucucgcCGGuGGCGGCGcCc -3'
miRNA:   3'- -CGCCG-CugGCCGc------GCCuCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 184623 0.66 0.79978
Target:  5'- aGCGGCagcguccacGAUCGGCGUcGcGuCGGCGGCg -3'
miRNA:   3'- -CGCCG---------CUGGCCGCGcCuCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 61895 0.66 0.79978
Target:  5'- cGCGGCGA---GCGCGGcGAgCGcaGCGACg -3'
miRNA:   3'- -CGCCGCUggcCGCGCCuCU-GC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 89755 0.66 0.803121
Target:  5'- cGCGGCGAUUGGCaGCuccgcgacgucGGGGAcaugccggaguuccuCGACGGg -3'
miRNA:   3'- -CGCCGCUGGCCG-CG-----------CCUCU---------------GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 118042 0.66 0.790483
Target:  5'- aGCaGGCGAgcguggcCCGucuCGCGGaAGACGGcCGACg -3'
miRNA:   3'- -CG-CCGCU-------GGCc--GCGCC-UCUGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 120011 0.66 0.78963
Target:  5'- -aGGCGAUCGaacucgaggacuCGCGGGGACgucgucauGACGGCg -3'
miRNA:   3'- cgCCGCUGGCc-----------GCGCCUCUG--------CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 129220 0.66 0.774074
Target:  5'- gGCGGUGGauaGGCGCGaacGGGCGGCuccGGCg -3'
miRNA:   3'- -CGCCGCUgg-CCGCGCc--UCUGCUG---CUG- -5'
10793 3' -61.3 NC_002794.1 + 116365 0.66 0.774074
Target:  5'- cGCGGUccGACCGGU-CGGuGGCGuGCGGg -3'
miRNA:   3'- -CGCCG--CUGGCCGcGCCuCUGC-UGCUg -5'
10793 3' -61.3 NC_002794.1 + 115598 0.66 0.774074
Target:  5'- uGCGGuCGAcccgcucgcCCGGCGCcgGGAGGCGGg--- -3'
miRNA:   3'- -CGCC-GCU---------GGCCGCG--CCUCUGCUgcug -5'
10793 3' -61.3 NC_002794.1 + 91195 0.66 0.774074
Target:  5'- cCGGCGACgCuGUuCGcGGACGGCGACg -3'
miRNA:   3'- cGCCGCUG-GcCGcGCcUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 194115 0.66 0.774074
Target:  5'- uGCGGC-ACCGcGCGCacggcuGAGGCaGCGGCc -3'
miRNA:   3'- -CGCCGcUGGC-CGCGc-----CUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184365 0.66 0.774074
Target:  5'- aGCGGCGcucCCaGCaGCGGAGGCaGuCGAa -3'
miRNA:   3'- -CGCCGCu--GGcCG-CGCCUCUG-CuGCUg -5'
10793 3' -61.3 NC_002794.1 + 95601 0.66 0.7819
Target:  5'- cGCGGCG-CCGGagcgcauCGUGGAccUGAUGACc -3'
miRNA:   3'- -CGCCGCuGGCC-------GCGCCUcuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 122628 0.66 0.780169
Target:  5'- cGCGGCuACgGGCacGCGGuGGACGugaucuaccugcugGCGGCg -3'
miRNA:   3'- -CGCCGcUGgCCG--CGCC-UCUGC--------------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 181897 0.66 0.777564
Target:  5'- -aGGCGACa-GCGCGG-GucguacaccacccgcGCGACGGCc -3'
miRNA:   3'- cgCCGCUGgcCGCGCCuC---------------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 84282 0.66 0.782763
Target:  5'- cGCaGCuGCCGaCGgGGAG-CGGCGGCg -3'
miRNA:   3'- -CGcCGcUGGCcGCgCCUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 58968 0.66 0.782763
Target:  5'- cGUGGaGGCCGaGCGCcugcGCGACGACg -3'
miRNA:   3'- -CGCCgCUGGC-CGCGccucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145367 0.66 0.788776
Target:  5'- uGUGGUcACCGG-GCGGAGACGcuccgcucgguggcGCGcCg -3'
miRNA:   3'- -CGCCGcUGGCCgCGCCUCUGC--------------UGCuG- -5'
10793 3' -61.3 NC_002794.1 + 139482 0.66 0.786206
Target:  5'- gGUGGUguaGAUgGGCGCGGGcgcgcugcagcacauGGCGAUGAa -3'
miRNA:   3'- -CGCCG---CUGgCCGCGCCU---------------CUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.