miRNA display CGI


Results 81 - 100 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 113500 0.66 0.75637
Target:  5'- cGCGcGCGGCCGagagcCGCGGAGGgagcucCGcCGGCu -3'
miRNA:   3'- -CGC-CGCUGGCc----GCGCCUCU------GCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 183613 0.66 0.75637
Target:  5'- cGCGcGCGGCCGGCGCccccGCGccccCGACu -3'
miRNA:   3'- -CGC-CGCUGGCCGCGccucUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 147104 0.66 0.75637
Target:  5'- uCGGCGcCCGGCccaaGGAcgaaGACGuCGACg -3'
miRNA:   3'- cGCCGCuGGCCGcg--CCU----CUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65361 0.66 0.75637
Target:  5'- -gGGCG-CCGGCGCccuGACGccacACGGCg -3'
miRNA:   3'- cgCCGCuGGCCGCGccuCUGC----UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121802 0.66 0.75637
Target:  5'- cGCGacCGGCCGGCGCcugccgcugcaGGAucgcuACGACGGCc -3'
miRNA:   3'- -CGCc-GCUGGCCGCG-----------CCUc----UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 140006 0.66 0.75637
Target:  5'- uGCgGGUGGa-GGcCGCGGAGGCcGCGGCc -3'
miRNA:   3'- -CG-CCGCUggCC-GCGCCUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 2712 0.66 0.75637
Target:  5'- aGgGGCGGuCUGGgGCGGucuuUGGCGACc -3'
miRNA:   3'- -CgCCGCU-GGCCgCGCCucu-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64016 0.66 0.765274
Target:  5'- --uGCGGCUGGCGauguCGGAgcuccaGugGACGGCg -3'
miRNA:   3'- cgcCGCUGGCCGC----GCCU------CugCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145324 0.66 0.765274
Target:  5'- cGCGGCGGgCGGCGCucGGGCccgaGCGGg -3'
miRNA:   3'- -CGCCGCUgGCCGCGccUCUGc---UGCUg -5'
10793 3' -61.3 NC_002794.1 + 160322 0.66 0.765274
Target:  5'- uUGG-GGCUGgaGCGCGGAugGGCGACGAa -3'
miRNA:   3'- cGCCgCUGGC--CGCGCCU--CUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 115598 0.66 0.774074
Target:  5'- uGCGGuCGAcccgcucgcCCGGCGCcgGGAGGCGGg--- -3'
miRNA:   3'- -CGCC-GCU---------GGCCGCG--CCUCUGCUgcug -5'
10793 3' -61.3 NC_002794.1 + 116365 0.66 0.774074
Target:  5'- cGCGGUccGACCGGU-CGGuGGCGuGCGGg -3'
miRNA:   3'- -CGCCG--CUGGCCGcGCCuCUGC-UGCUg -5'
10793 3' -61.3 NC_002794.1 + 129220 0.66 0.774074
Target:  5'- gGCGGUGGauaGGCGCGaacGGGCGGCuccGGCg -3'
miRNA:   3'- -CGCCGCUgg-CCGCGCc--UCUGCUG---CUG- -5'
10793 3' -61.3 NC_002794.1 + 50346 0.66 0.774074
Target:  5'- uCGGUcACCGGCuccgccaugaccGCGGAGcCGGcCGGCa -3'
miRNA:   3'- cGCCGcUGGCCG------------CGCCUCuGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 6844 0.66 0.774074
Target:  5'- cCGG--GCCGGC-CGGAGAgGAgGACu -3'
miRNA:   3'- cGCCgcUGGCCGcGCCUCUgCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 92483 0.66 0.774074
Target:  5'- -gGGCcucaACCGGUGCGuGGACGagGCGGCc -3'
miRNA:   3'- cgCCGc---UGGCCGCGCcUCUGC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 181744 0.66 0.774074
Target:  5'- cGCGaGCGGCCGGCcagcccGCuGAcGcCGAUGGCg -3'
miRNA:   3'- -CGC-CGCUGGCCG------CGcCU-CuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 54841 0.66 0.771445
Target:  5'- gGCGGCacccaacgcccguaGGCCGGCGCGG-GcCGcCGcaGCg -3'
miRNA:   3'- -CGCCG--------------CUGGCCGCGCCuCuGCuGC--UG- -5'
10793 3' -61.3 NC_002794.1 + 188344 0.66 0.765274
Target:  5'- gGCGGCG-CCGucGCGCccguccGGccGGCGGCGGCc -3'
miRNA:   3'- -CGCCGCuGGC--CGCG------CCu-CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184063 0.66 0.766159
Target:  5'- cGCGGCGAagcggcacgcgcccaCGGUguaGCGGcAGAaCGGCGAa -3'
miRNA:   3'- -CGCCGCUg--------------GCCG---CGCC-UCU-GCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.