miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 16508 0.66 0.89934
Target:  5'- cCGCCGCCGuccccggcGUcgCCACCGCCguccccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCu-------CAa-GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 121240 0.66 0.89934
Target:  5'- gUCGCCGCUGccg-CCGCCGCCgccgcGGcCu -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGa----CCaG- -5'
10793 5' -57.8 NC_002794.1 + 79128 0.66 0.89934
Target:  5'- uUCGCCACCGAGUaCgACgCGCCc---- -3'
miRNA:   3'- -AGCGGUGGCUCAaGgUG-GUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 129488 0.66 0.892985
Target:  5'- gUCGCCcgaauCCGGuUUCCgugucGCCGCCgcGGUCg -3'
miRNA:   3'- -AGCGGu----GGCUcAAGG-----UGGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 56556 0.66 0.892985
Target:  5'- cUCGCCGCCGccc-CCGCCGCCg---- -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 53605 0.66 0.892985
Target:  5'- gCGUCACCGGG--CCGCCGCagcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGgacCAG- -5'
10793 5' -57.8 NC_002794.1 + 40345 0.66 0.892985
Target:  5'- gCGCCACCGGcGg--CGCCGCCUcucGUCu -3'
miRNA:   3'- aGCGGUGGCU-CaagGUGGUGGAc--CAG- -5'
10793 5' -57.8 NC_002794.1 + 103845 0.66 0.892985
Target:  5'- cUUGaCCACCGAGcgggCCGCCGCCg---- -3'
miRNA:   3'- -AGC-GGUGGCUCaa--GGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 61428 0.66 0.891036
Target:  5'- -gGCguCCGAGcUggugcagacguacgUCCGCCGCCUGGcCc -3'
miRNA:   3'- agCGguGGCUC-A--------------AGGUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 71737 0.66 0.890382
Target:  5'- cCGCCacGCCGAaggCCGCCGCCggcucuuccgaccGGUCc -3'
miRNA:   3'- aGCGG--UGGCUcaaGGUGGUGGa------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 187748 0.66 0.886414
Target:  5'- gUCGCCAucuCCGAacgCCGCCggcGCC-GGUCg -3'
miRNA:   3'- -AGCGGU---GGCUcaaGGUGG---UGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 144494 0.66 0.886414
Target:  5'- cCGCCGCCGA--UCgGgCACCU-GUCg -3'
miRNA:   3'- aGCGGUGGCUcaAGgUgGUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 59472 0.66 0.879631
Target:  5'- cCGCCGCUaccucgagGAGUUCCcgcACUACCUGcGcCa -3'
miRNA:   3'- aGCGGUGG--------CUCAAGG---UGGUGGAC-CaG- -5'
10793 5' -57.8 NC_002794.1 + 183860 0.66 0.879631
Target:  5'- gUCGCgGCCGucGGggCCACCGCCg---- -3'
miRNA:   3'- -AGCGgUGGC--UCaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 124402 0.66 0.879631
Target:  5'- gUCGCCGgucgUCGGGgcgCCGuCCGCCgcGGUCu -3'
miRNA:   3'- -AGCGGU----GGCUCaa-GGU-GGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 93695 0.66 0.879631
Target:  5'- uUCGUC-CUGg---CCACgCGCCUGGUCg -3'
miRNA:   3'- -AGCGGuGGCucaaGGUG-GUGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 12272 0.66 0.879631
Target:  5'- aCGUCuCCGGGuUUCCG-CGCCUGGg- -3'
miRNA:   3'- aGCGGuGGCUC-AAGGUgGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 16969 0.66 0.879631
Target:  5'- cUCGUCGCCGAGcccgUUCAUCAUCUacccGUCa -3'
miRNA:   3'- -AGCGGUGGCUCa---AGGUGGUGGAc---CAG- -5'
10793 5' -57.8 NC_002794.1 + 82737 0.66 0.879631
Target:  5'- cUCGCCG-CGAGccgCCGCCACCgccgcGGa- -3'
miRNA:   3'- -AGCGGUgGCUCaa-GGUGGUGGa----CCag -5'
10793 5' -57.8 NC_002794.1 + 156705 0.66 0.879631
Target:  5'- cCGCCGCCGuc--CCACCGaucGGUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUggaCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.