miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 53605 0.66 0.892985
Target:  5'- gCGUCACCGGG--CCGCCGCagcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGgacCAG- -5'
10793 5' -57.8 NC_002794.1 + 56556 0.66 0.892985
Target:  5'- cUCGCCGCCGccc-CCGCCGCCg---- -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 129488 0.66 0.892985
Target:  5'- gUCGCCcgaauCCGGuUUCCgugucGCCGCCgcGGUCg -3'
miRNA:   3'- -AGCGGu----GGCUcAAGG-----UGGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 156705 0.66 0.879631
Target:  5'- cCGCCGCCGuc--CCACCGaucGGUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUggaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 187748 0.66 0.886414
Target:  5'- gUCGCCAucuCCGAacgCCGCCggcGCC-GGUCg -3'
miRNA:   3'- -AGCGGU---GGCUcaaGGUGG---UGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 144494 0.66 0.886414
Target:  5'- cCGCCGCCGA--UCgGgCACCU-GUCg -3'
miRNA:   3'- aGCGGUGGCUcaAGgUgGUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 71737 0.66 0.890382
Target:  5'- cCGCCacGCCGAaggCCGCCGCCggcucuuccgaccGGUCc -3'
miRNA:   3'- aGCGG--UGGCUcaaGGUGGUGGa------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 61428 0.66 0.891036
Target:  5'- -gGCguCCGAGcUggugcagacguacgUCCGCCGCCUGGcCc -3'
miRNA:   3'- agCGguGGCUC-A--------------AGGUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 77964 0.67 0.834745
Target:  5'- cCGUCGCCGAGccgacUCCuCCGCCUcGGa- -3'
miRNA:   3'- aGCGGUGGCUCa----AGGuGGUGGA-CCag -5'
10793 5' -57.8 NC_002794.1 + 17230 0.67 0.850469
Target:  5'- cCGCCACCGccg-CCACCACCcu-UCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGaccAG- -5'
10793 5' -57.8 NC_002794.1 + 46974 0.67 0.848157
Target:  5'- -aGCCACCGuGUUCCucgucccCCGCCggcacggcaagacgUGGUUc -3'
miRNA:   3'- agCGGUGGCuCAAGGu------GGUGG--------------ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 96195 0.67 0.850469
Target:  5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3'
miRNA:   3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 194397 0.67 0.850469
Target:  5'- gCGCCGCCcGGUcguucgcgUCCGCCACCgccGUa -3'
miRNA:   3'- aGCGGUGGcUCA--------AGGUGGUGGac-CAg -5'
10793 5' -57.8 NC_002794.1 + 83638 0.67 0.850469
Target:  5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3'
miRNA:   3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 8110 0.67 0.858054
Target:  5'- gCGCCACCGAGcgggCgGCgGCCUccucGGUg -3'
miRNA:   3'- aGCGGUGGCUCaa--GgUGgUGGA----CCAg -5'
10793 5' -57.8 NC_002794.1 + 121385 0.67 0.858054
Target:  5'- cCGCCGCCGGGaccgcggCCGgCGCCgGGa- -3'
miRNA:   3'- aGCGGUGGCUCaa-----GGUgGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 110321 0.67 0.858054
Target:  5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3'
miRNA:   3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 69283 0.67 0.858054
Target:  5'- cCGCCGCCGAacgCCGCCACUg---- -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 135996 0.67 0.858054
Target:  5'- uUCGCUGuCCGGG-UCCAguCCGC-UGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaAGGU--GGUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 60759 0.67 0.834745
Target:  5'- cUCGaCCuCUGAGcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGC-GGuGGCUCaaGGUGGUGGac-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.