miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 192370 0.67 0.829889
Target:  5'- cCGCCgACCGAGcgcgggcugaccgCCACCGCCgcgccggGGUa -3'
miRNA:   3'- aGCGG-UGGCUCaa-----------GGUGGUGGa------CCAg -5'
10793 5' -57.8 NC_002794.1 + 60759 0.67 0.834745
Target:  5'- cUCGaCCuCUGAGcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGC-GGuGGCUCaaGGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 186984 0.67 0.858054
Target:  5'- gCGCgCACC-AGcUCCGCCGgCUGcGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUgGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 135996 0.67 0.858054
Target:  5'- uUCGCUGuCCGGG-UCCAguCCGC-UGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaAGGU--GGUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 69283 0.67 0.858054
Target:  5'- cCGCCGCCGAacgCCGCCACUg---- -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 110321 0.67 0.858054
Target:  5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3'
miRNA:   3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 121385 0.67 0.858054
Target:  5'- cCGCCGCCGGGaccgcggCCGgCGCCgGGa- -3'
miRNA:   3'- aGCGGUGGCUCaa-----GGUgGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 8110 0.67 0.858054
Target:  5'- gCGCCACCGAGcgggCgGCgGCCUccucGGUg -3'
miRNA:   3'- aGCGGUGGCUCaa--GgUGgUGGA----CCAg -5'
10793 5' -57.8 NC_002794.1 + 83638 0.67 0.850469
Target:  5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3'
miRNA:   3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 194397 0.67 0.850469
Target:  5'- gCGCCGCCcGGUcguucgcgUCCGCCACCgccGUa -3'
miRNA:   3'- aGCGGUGGcUCA--------AGGUGGUGGac-CAg -5'
10793 5' -57.8 NC_002794.1 + 96195 0.67 0.850469
Target:  5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3'
miRNA:   3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 46974 0.67 0.848157
Target:  5'- -aGCCACCGuGUUCCucgucccCCGCCggcacggcaagacgUGGUUc -3'
miRNA:   3'- agCGGUGGCuCAAGGu------GGUGG--------------ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 17230 0.67 0.850469
Target:  5'- cCGCCACCGccg-CCACCACCcu-UCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGaccAG- -5'
10793 5' -57.8 NC_002794.1 + 77964 0.67 0.834745
Target:  5'- cCGUCGCCGAGccgacUCCuCCGCCUcGGa- -3'
miRNA:   3'- aGCGGUGGCUCa----AGGuGGUGGA-CCag -5'
10793 5' -57.8 NC_002794.1 + 69799 0.68 0.801267
Target:  5'- gCGCCGCCGcGUagcCCGCCGCCgcgaccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCuCAa--GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 16571 0.68 0.801267
Target:  5'- cCGCCGCCGccaccaCCGCCGCCgccGUCu -3'
miRNA:   3'- aGCGGUGGCucaa--GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 113929 0.68 0.801267
Target:  5'- -gGCCGCCGAGgcgacgggCCGCUGCCgGGc- -3'
miRNA:   3'- agCGGUGGCUCaa------GGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 75361 0.68 0.809872
Target:  5'- uUCGCCACCGAcccgCCGCgGCCggcGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa-GGUGgUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 76959 0.68 0.809018
Target:  5'- aCGCCGuCCGGccGgcCCGCCgagcucgACCUGGUCc -3'
miRNA:   3'- aGCGGU-GGCU--CaaGGUGG-------UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 11538 0.68 0.801267
Target:  5'- -gGCgACCGAGgaCCGCgGC-UGGUCg -3'
miRNA:   3'- agCGgUGGCUCaaGGUGgUGgACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.