miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 105486 0.69 0.746887
Target:  5'- gUCGUCuCCGGucGUggagCCGCCGCCgccGGUCg -3'
miRNA:   3'- -AGCGGuGGCU--CAa---GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 12176 0.69 0.765483
Target:  5'- gUCGCCGCCGAcgccgCCGCgGCCgGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa--GGUGgUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 134613 0.69 0.756237
Target:  5'- aUC-CCGCCGAGUUgaccgCCAUCGCCUgccGGUUc -3'
miRNA:   3'- -AGcGGUGGCUCAA-----GGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 57608 0.69 0.756237
Target:  5'- -gGCCACCGAGaaggcggCCgACgACCUGGcCg -3'
miRNA:   3'- agCGGUGGCUCaa-----GG-UGgUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 122151 0.69 0.756237
Target:  5'- aCGCCgGCCGuG-UCCgACUACCUGGcCg -3'
miRNA:   3'- aGCGG-UGGCuCaAGG-UGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 12849 0.69 0.756237
Target:  5'- aCGaCACCGAGUgggggACCACCUGGg- -3'
miRNA:   3'- aGCgGUGGCUCAagg--UGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 82583 0.69 0.754375
Target:  5'- aCGCCGCCGAGacggagacccucUCCGCgGCCgaaGUCa -3'
miRNA:   3'- aGCGGUGGCUCa-----------AGGUGgUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 185923 0.69 0.746887
Target:  5'- cUCGCCACCGccggCCACCcGCCaGGcUCg -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGG-UGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 193956 0.7 0.68909
Target:  5'- cCGCCACCGccg-CCACCGCC--GUCa -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 13860 0.7 0.698883
Target:  5'- gUCGCCGCCGccgcgacccGGUUCUccgagcGCCGCCcugUGGUUc -3'
miRNA:   3'- -AGCGGUGGC---------UCAAGG------UGGUGG---ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 33798 0.7 0.679253
Target:  5'- cCGCCACCaGaAGUUCUGCCAgCUGcUCa -3'
miRNA:   3'- aGCGGUGG-C-UCAAGGUGGUgGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 144904 0.7 0.679253
Target:  5'- gCGCCGCUGGGccCCGCCGCC-GG-Ca -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 190677 0.7 0.66344
Target:  5'- gCGCCGCCGGGUcUCCACgcaCACCUcccggcgcagcgucgGGUUc -3'
miRNA:   3'- aGCGGUGGCUCA-AGGUG---GUGGA---------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 138020 0.7 0.68909
Target:  5'- aCGCCACC-AGUUCCGaguCgUGGUCg -3'
miRNA:   3'- aGCGGUGGcUCAAGGUgguGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 108592 0.7 0.68909
Target:  5'- aCGCUAUCGcGGcgCgGCCgACCUGGUCg -3'
miRNA:   3'- aGCGGUGGC-UCaaGgUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 52909 0.7 0.698883
Target:  5'- cCGCCGCCGucg-CCGCCGCC--GUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 72903 0.7 0.70668
Target:  5'- cUCGCCACCGucgcgcucgCCGCCGCCgucGGa- -3'
miRNA:   3'- -AGCGGUGGCucaa-----GGUGGUGGa--CCag -5'
10793 5' -57.8 NC_002794.1 + 181536 0.7 0.698883
Target:  5'- cCGCCGCCGGcGggCCGgCGCuCUcGGUCg -3'
miRNA:   3'- aGCGGUGGCU-CaaGGUgGUG-GA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 17659 0.7 0.708623
Target:  5'- cCGCCACCGccg-CCACCGCCgccGGcCc -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 62589 0.7 0.708623
Target:  5'- cCGCCGCCGAcgccaGggCCACCGCCgccuucGGa- -3'
miRNA:   3'- aGCGGUGGCU-----CaaGGUGGUGGa-----CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.