miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 183900 0.69 0.718302
Target:  5'- cCGCCGCCGA----CGCCAUCUGGg- -3'
miRNA:   3'- aGCGGUGGCUcaagGUGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 185923 0.69 0.746887
Target:  5'- cUCGCCACCGccggCCACCcGCCaGGcUCg -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGG-UGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 122151 0.69 0.756237
Target:  5'- aCGCCgGCCGuG-UCCgACUACCUGGcCg -3'
miRNA:   3'- aGCGG-UGGCuCaAGG-UGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 11442 0.69 0.737442
Target:  5'- aCGCC-CCGAGcucgCCGCCACC-GG-Cg -3'
miRNA:   3'- aGCGGuGGCUCaa--GGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 187537 0.69 0.725995
Target:  5'- cCGCCGCCGcgaccgccgCCACCGCCgccGUCg -3'
miRNA:   3'- aGCGGUGGCucaa-----GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 71063 0.69 0.718302
Target:  5'- cCGCCGCCGcAGca--GCCGCCgGGUCc -3'
miRNA:   3'- aGCGGUGGC-UCaaggUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 16934 0.69 0.718302
Target:  5'- gUCGgCGCCGAGccgCCACCGCCUc--- -3'
miRNA:   3'- -AGCgGUGGCUCaa-GGUGGUGGAccag -5'
10793 5' -57.8 NC_002794.1 + 149242 0.69 0.727911
Target:  5'- cCGUCGCCGGGgucgcggcgCCACCACCcucGUCc -3'
miRNA:   3'- aGCGGUGGCUCaa-------GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 151642 0.69 0.718302
Target:  5'- cUCGCCGCCGGccggcacuuGgcUCGCCGCCgGGUg -3'
miRNA:   3'- -AGCGGUGGCU---------CaaGGUGGUGGaCCAg -5'
10793 5' -57.8 NC_002794.1 + 82583 0.69 0.754375
Target:  5'- aCGCCGCCGAGacggagacccucUCCGCgGCCgaaGUCa -3'
miRNA:   3'- aGCGGUGGCUCa-----------AGGUGgUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 12849 0.69 0.756237
Target:  5'- aCGaCACCGAGUgggggACCACCUGGg- -3'
miRNA:   3'- aGCgGUGGCUCAagg--UGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 189417 0.69 0.727911
Target:  5'- -gGCCAgCGGGUUCUGCUGCCgcaGGUa -3'
miRNA:   3'- agCGGUgGCUCAAGGUGGUGGa--CCAg -5'
10793 5' -57.8 NC_002794.1 + 57608 0.69 0.756237
Target:  5'- -gGCCACCGAGaaggcggCCgACgACCUGGcCg -3'
miRNA:   3'- agCGGUGGCUCaa-----GG-UGgUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 131257 0.69 0.727911
Target:  5'- aCGCCGCCGGca-CCACCGCC-GG-Ca -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 134613 0.69 0.756237
Target:  5'- aUC-CCGCCGAGUUgaccgCCAUCGCCUgccGGUUc -3'
miRNA:   3'- -AGcGGUGGCUCAA-----GGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 69799 0.68 0.801267
Target:  5'- gCGCCGCCGcGUagcCCGCCGCCgcgaccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCuCAa--GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 16571 0.68 0.801267
Target:  5'- cCGCCGCCGccaccaCCGCCGCCgccGUCu -3'
miRNA:   3'- aGCGGUGGCucaa--GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 113929 0.68 0.801267
Target:  5'- -gGCCGCCGAGgcgacgggCCGCUGCCgGGc- -3'
miRNA:   3'- agCGGUGGCUCaa------GGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 75361 0.68 0.809872
Target:  5'- uUCGCCACCGAcccgCCGCgGCCggcGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa-GGUGgUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 76959 0.68 0.809018
Target:  5'- aCGCCGuCCGGccGgcCCGCCgagcucgACCUGGUCc -3'
miRNA:   3'- aGCGGU-GGCU--CaaGGUGG-------UGGACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.