miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 79479 1.09 0.00246
Target:  5'- gUCGCCACCGAGUUCCACCACCUGGUCu -3'
miRNA:   3'- -AGCGGUGGCUCAAGGUGGUGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 15413 0.78 0.27331
Target:  5'- cCGCCAUCGAGUgCCACCACC-GGa- -3'
miRNA:   3'- aGCGGUGGCUCAaGGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 125966 0.76 0.341851
Target:  5'- cUCGUCGCCGAGUUCCugCugCagcUGGcCa -3'
miRNA:   3'- -AGCGGUGGCUCAAGGugGugG---ACCaG- -5'
10793 5' -57.8 NC_002794.1 + 137575 0.76 0.348595
Target:  5'- gUCGCCGCCGgggccggagugcgGGgagCCGCCGCCggcGGUCg -3'
miRNA:   3'- -AGCGGUGGC-------------UCaa-GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 186102 0.76 0.349351
Target:  5'- uUCGUCGCCGucg-CCGCCGCCgGGUCc -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 58010 0.76 0.372545
Target:  5'- gUCGCCGCCGGGg-CCGCCGCC-GG-Cg -3'
miRNA:   3'- -AGCGGUGGCUCaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 68314 0.75 0.396764
Target:  5'- -gGCgGCCGAcgcGUUCCGCgGCCUGGUg -3'
miRNA:   3'- agCGgUGGCU---CAAGGUGgUGGACCAg -5'
10793 5' -57.8 NC_002794.1 + 73975 0.75 0.405059
Target:  5'- cUCGCCGCCGcuacUCCGCUacgacgACCUGGUCc -3'
miRNA:   3'- -AGCGGUGGCuca-AGGUGG------UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 17270 0.74 0.439305
Target:  5'- cUCGUCAcCCGGGcacgCCGCCGCCgacGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaa--GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 21884 0.74 0.439305
Target:  5'- -gGCCGCgGGGUgUCCGCgGCCUGcGUCg -3'
miRNA:   3'- agCGGUGgCUCA-AGGUGgUGGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 150034 0.74 0.439305
Target:  5'- -gGCCGCCGAGUggagCCGCUACCgacugcGGUg -3'
miRNA:   3'- agCGGUGGCUCAa---GGUGGUGGa-----CCAg -5'
10793 5' -57.8 NC_002794.1 + 70588 0.74 0.448122
Target:  5'- gUCGCCgACUGcGUcaacauauauUCCACCACCgGGUCg -3'
miRNA:   3'- -AGCGG-UGGCuCA----------AGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 49464 0.74 0.457037
Target:  5'- gCGCCGCCGuGacCgGCCGCCgcgGGUCu -3'
miRNA:   3'- aGCGGUGGCuCaaGgUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 152696 0.73 0.493604
Target:  5'- gCGCCuACCGuGUcUCCGCCACCUGa-- -3'
miRNA:   3'- aGCGG-UGGCuCA-AGGUGGUGGACcag -5'
10793 5' -57.8 NC_002794.1 + 185272 0.73 0.506718
Target:  5'- cCGCCgGCCGAGUgggCCgccggacaggucagcACCACCcGGUCg -3'
miRNA:   3'- aGCGG-UGGCUCAa--GG---------------UGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 111625 0.73 0.512385
Target:  5'- -gGCCGCCGcgg-CCGCCGCC-GGUCg -3'
miRNA:   3'- agCGGUGGCucaaGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 39350 0.73 0.531453
Target:  5'- gUGCgCGCUGGGcUUCGCCACCaUGGUCu -3'
miRNA:   3'- aGCG-GUGGCUCaAGGUGGUGG-ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 194058 0.73 0.531453
Target:  5'- cCGCCGCCGAGag-CGCCGCCUucGUCg -3'
miRNA:   3'- aGCGGUGGCUCaagGUGGUGGAc-CAG- -5'
10793 5' -57.8 NC_002794.1 + 184002 0.72 0.550772
Target:  5'- cCGCCACCGuG-UCCACCAUCgccGGcCg -3'
miRNA:   3'- aGCGGUGGCuCaAGGUGGUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 131284 0.72 0.550772
Target:  5'- cCGCCggcGCCGucGcUCCGCCGCCcgUGGUCg -3'
miRNA:   3'- aGCGG---UGGCu-CaAGGUGGUGG--ACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.