miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 191502 0.72 0.560513
Target:  5'- cCGCCACCGAGaggugCCAgCGCCggGcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaa---GGUgGUGGa-C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 74912 0.71 0.607818
Target:  5'- aCGCCACCGuccucgaagUCACCGacuuCCUGGUCg -3'
miRNA:   3'- aGCGGUGGCucaa-----GGUGGU----GGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 145863 0.71 0.609803
Target:  5'- -aGCCGCCGAGggCCGCgACC-GGa- -3'
miRNA:   3'- agCGGUGGCUCaaGGUGgUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 147505 0.71 0.609803
Target:  5'- -aGCuuCACCGAGUUCCuCgGCCUGGg- -3'
miRNA:   3'- agCG--GUGGCUCAAGGuGgUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 61956 0.71 0.619734
Target:  5'- cCGCCcCCGAGgccagcggCCGCCugCUgcaGGUCa -3'
miRNA:   3'- aGCGGuGGCUCaa------GGUGGugGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 182772 0.7 0.659476
Target:  5'- cCGCaCGCCcGG-UCCACCACCUgccagcgcacGGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUGGA----------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 190677 0.7 0.66344
Target:  5'- gCGCCGCCGGGUcUCCACgcaCACCUcccggcgcagcgucgGGUUc -3'
miRNA:   3'- aGCGGUGGCUCA-AGGUG---GUGGA---------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 33798 0.7 0.679253
Target:  5'- cCGCCACCaGaAGUUCUGCCAgCUGcUCa -3'
miRNA:   3'- aGCGGUGG-C-UCAAGGUGGUgGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 144904 0.7 0.679253
Target:  5'- gCGCCGCUGGGccCCGCCGCC-GG-Ca -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 138020 0.7 0.68909
Target:  5'- aCGCCACC-AGUUCCGaguCgUGGUCg -3'
miRNA:   3'- aGCGGUGGcUCAAGGUgguGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 193956 0.7 0.68909
Target:  5'- cCGCCACCGccg-CCACCGCC--GUCa -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 108592 0.7 0.68909
Target:  5'- aCGCUAUCGcGGcgCgGCCgACCUGGUCg -3'
miRNA:   3'- aGCGGUGGC-UCaaGgUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 13860 0.7 0.698883
Target:  5'- gUCGCCGCCGccgcgacccGGUUCUccgagcGCCGCCcugUGGUUc -3'
miRNA:   3'- -AGCGGUGGC---------UCAAGG------UGGUGG---ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 181536 0.7 0.698883
Target:  5'- cCGCCGCCGGcGggCCGgCGCuCUcGGUCg -3'
miRNA:   3'- aGCGGUGGCU-CaaGGUgGUG-GA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 52909 0.7 0.698883
Target:  5'- cCGCCGCCGucg-CCGCCGCC--GUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 72903 0.7 0.70668
Target:  5'- cUCGCCACCGucgcgcucgCCGCCGCCgucGGa- -3'
miRNA:   3'- -AGCGGUGGCucaa-----GGUGGUGGa--CCag -5'
10793 5' -57.8 NC_002794.1 + 62589 0.7 0.708623
Target:  5'- cCGCCGCCGAcgccaGggCCACCGCCgccuucGGa- -3'
miRNA:   3'- aGCGGUGGCU-----CaaGGUGGUGGa-----CCag -5'
10793 5' -57.8 NC_002794.1 + 17659 0.7 0.708623
Target:  5'- cCGCCACCGccg-CCACCGCCgccGGcCc -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 183900 0.69 0.718302
Target:  5'- cCGCCGCCGA----CGCCAUCUGGg- -3'
miRNA:   3'- aGCGGUGGCUcaagGUGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 71063 0.69 0.718302
Target:  5'- cCGCCGCCGcAGca--GCCGCCgGGUCc -3'
miRNA:   3'- aGCGGUGGC-UCaaggUGGUGGaCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.