miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 31341 0.66 0.87264
Target:  5'- gCGcCCGCCGuG-UCCGCCGCCcgcucGUCg -3'
miRNA:   3'- aGC-GGUGGCuCaAGGUGGUGGac---CAG- -5'
10793 5' -57.8 NC_002794.1 + 61222 0.66 0.87264
Target:  5'- cUCGCCAUgGAGaucaaCCAacggCugCUGGUCa -3'
miRNA:   3'- -AGCGGUGgCUCaa---GGUg---GugGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 70629 0.66 0.87264
Target:  5'- cCGCC-CCG-GUcgcaCCGCCACCaGGUUc -3'
miRNA:   3'- aGCGGuGGCuCAa---GGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 180844 0.66 0.87264
Target:  5'- gCGUCACCGucgUCUACgGCCUcGUCg -3'
miRNA:   3'- aGCGGUGGCucaAGGUGgUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 186224 0.66 0.865446
Target:  5'- -gGCgGuCCGGGUcCCGCCACCaGuGUCg -3'
miRNA:   3'- agCGgU-GGCUCAaGGUGGUGGaC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 99910 0.66 0.865446
Target:  5'- cCGCCACCG-GaUCaCGCCgugcgGCgUGGUCu -3'
miRNA:   3'- aGCGGUGGCuCaAG-GUGG-----UGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 58430 0.66 0.865446
Target:  5'- cCGCCagacGCCGAGg-CCACgcugCGCCUGGcCg -3'
miRNA:   3'- aGCGG----UGGCUCaaGGUG----GUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 12902 0.66 0.864716
Target:  5'- cCGCUcgacuggGCCGAGU---ACCGCCUGGcCg -3'
miRNA:   3'- aGCGG-------UGGCUCAaggUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 8110 0.67 0.858054
Target:  5'- gCGCCACCGAGcgggCgGCgGCCUccucGGUg -3'
miRNA:   3'- aGCGGUGGCUCaa--GgUGgUGGA----CCAg -5'
10793 5' -57.8 NC_002794.1 + 121385 0.67 0.858054
Target:  5'- cCGCCGCCGGGaccgcggCCGgCGCCgGGa- -3'
miRNA:   3'- aGCGGUGGCUCaa-----GGUgGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 110321 0.67 0.858054
Target:  5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3'
miRNA:   3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 69283 0.67 0.858054
Target:  5'- cCGCCGCCGAacgCCGCCACUg---- -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 135996 0.67 0.858054
Target:  5'- uUCGCUGuCCGGG-UCCAguCCGC-UGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaAGGU--GGUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 186984 0.67 0.858054
Target:  5'- gCGCgCACC-AGcUCCGCCGgCUGcGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUgGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 17230 0.67 0.850469
Target:  5'- cCGCCACCGccg-CCACCACCcu-UCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGaccAG- -5'
10793 5' -57.8 NC_002794.1 + 96195 0.67 0.850469
Target:  5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3'
miRNA:   3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 194397 0.67 0.850469
Target:  5'- gCGCCGCCcGGUcguucgcgUCCGCCACCgccGUa -3'
miRNA:   3'- aGCGGUGGcUCA--------AGGUGGUGGac-CAg -5'
10793 5' -57.8 NC_002794.1 + 83638 0.67 0.850469
Target:  5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3'
miRNA:   3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 46974 0.67 0.848157
Target:  5'- -aGCCACCGuGUUCCucgucccCCGCCggcacggcaagacgUGGUUc -3'
miRNA:   3'- agCGGUGGCuCAAGGu------GGUGG--------------ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 60759 0.67 0.834745
Target:  5'- cUCGaCCuCUGAGcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGC-GGuGGCUCaaGGUGGUGGac-CAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.