miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 60759 0.67 0.834745
Target:  5'- cUCGaCCuCUGAGcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGC-GGuGGCUCaaGGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 91610 0.67 0.829889
Target:  5'- gCGCgGCCGAGggCCacgccgaccuccugcGCCGCCUG-UCc -3'
miRNA:   3'- aGCGgUGGCUCaaGG---------------UGGUGGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 192370 0.67 0.829889
Target:  5'- cCGCCgACCGAGcgcgggcugaccgCCACCGCCgcgccggGGUa -3'
miRNA:   3'- aGCGG-UGGCUCaa-----------GGUGGUGGa------CCAg -5'
10793 5' -57.8 NC_002794.1 + 50712 0.67 0.826618
Target:  5'- uUCGCCGCCucGcgUUCGCCGCCcGGg- -3'
miRNA:   3'- -AGCGGUGGcuCa-AGGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 42205 0.67 0.826618
Target:  5'- cUCGCCGCCGccggUCUGCCG-CUGGaUCa -3'
miRNA:   3'- -AGCGGUGGCuca-AGGUGGUgGACC-AG- -5'
10793 5' -57.8 NC_002794.1 + 80957 0.67 0.826618
Target:  5'- gCGCCAagcUCGGGUUCCgcgucauccuGCCGCugcccuccgguCUGGUCa -3'
miRNA:   3'- aGCGGU---GGCUCAAGG----------UGGUG-----------GACCAG- -5'
10793 5' -57.8 NC_002794.1 + 133673 0.67 0.826618
Target:  5'- gUCGCgggguuuugacaUACUggGGGUUCUACCGCCUguaGGUCg -3'
miRNA:   3'- -AGCG------------GUGG--CUCAAGGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 73937 0.67 0.826618
Target:  5'- gUCGCCGCCGAa---CGCUuCCUGGcCa -3'
miRNA:   3'- -AGCGGUGGCUcaagGUGGuGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 185986 0.67 0.826618
Target:  5'- cCGCCACCGuc-UCCuCCGCCgGGcUCc -3'
miRNA:   3'- aGCGGUGGCucaAGGuGGUGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 11788 0.67 0.826618
Target:  5'- aUCGCCGCgGuGUccguggcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGCGGUGgCuCAa-------GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 179429 0.67 0.819162
Target:  5'- -gGCC-CCGGGcgcggaggcguggaCCACCGCCUcGGUCg -3'
miRNA:   3'- agCGGuGGCUCaa------------GGUGGUGGA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 28690 0.67 0.818325
Target:  5'- gUCGCCGCCGccGUUgCugCugCUGccGUCg -3'
miRNA:   3'- -AGCGGUGGCu-CAAgGugGugGAC--CAG- -5'
10793 5' -57.8 NC_002794.1 + 121439 0.67 0.818325
Target:  5'- cCaCCACCGAGaccaCgGCCGCCgucgGGUCg -3'
miRNA:   3'- aGcGGUGGCUCaa--GgUGGUGGa---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 16484 0.67 0.818325
Target:  5'- cCGCCGCCGcc-UCCGCCGCCa---- -3'
miRNA:   3'- aGCGGUGGCucaAGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 75361 0.68 0.809872
Target:  5'- uUCGCCACCGAcccgCCGCgGCCggcGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa-GGUGgUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 76959 0.68 0.809018
Target:  5'- aCGCCGuCCGGccGgcCCGCCgagcucgACCUGGUCc -3'
miRNA:   3'- aGCGGU-GGCU--CaaGGUGG-------UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 69799 0.68 0.801267
Target:  5'- gCGCCGCCGcGUagcCCGCCGCCgcgaccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCuCAa--GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 16571 0.68 0.801267
Target:  5'- cCGCCGCCGccaccaCCGCCGCCgccGUCu -3'
miRNA:   3'- aGCGGUGGCucaa--GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 113929 0.68 0.801267
Target:  5'- -gGCCGCCGAGgcgacgggCCGCUGCCgGGc- -3'
miRNA:   3'- agCGGUGGCUCaa------GGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 11538 0.68 0.801267
Target:  5'- -gGCgACCGAGgaCCGCgGC-UGGUCg -3'
miRNA:   3'- agCGgUGGCUCaaGGUGgUGgACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.