miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 62239 0.68 0.801267
Target:  5'- cCGCCugacGCUGAacguGUUCgCGCUgcGCCUGGUCa -3'
miRNA:   3'- aGCGG----UGGCU----CAAG-GUGG--UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 83785 0.68 0.792518
Target:  5'- cCGCCGCCGcg-UCCGCCGuCCUGc-- -3'
miRNA:   3'- aGCGGUGGCucaAGGUGGU-GGACcag -5'
10793 5' -57.8 NC_002794.1 + 81027 0.68 0.783632
Target:  5'- cCGCaCGCuCGugcGGaUCCucaACCACCUGGUCa -3'
miRNA:   3'- aGCG-GUG-GC---UCaAGG---UGGUGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 38502 0.68 0.783632
Target:  5'- gCGgCGCCG-GUcgCCGCCGCCUccgcgaucccaGGUCg -3'
miRNA:   3'- aGCgGUGGCuCAa-GGUGGUGGA-----------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 99415 0.68 0.782736
Target:  5'- cCGCCGucgcagcaggguCCGGGUuuguuggaccggaUCCGCCGCCgggGGUa -3'
miRNA:   3'- aGCGGU------------GGCUCA-------------AGGUGGUGGa--CCAg -5'
10793 5' -57.8 NC_002794.1 + 15381 0.68 0.774618
Target:  5'- cCGCauCACCGAGUUCaaccaCACgCACCUGGn- -3'
miRNA:   3'- aGCG--GUGGCUCAAG-----GUG-GUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 74128 0.68 0.774618
Target:  5'- -gGCCGCCG----CCGCCGucucCCUGGUCg -3'
miRNA:   3'- agCGGUGGCucaaGGUGGU----GGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 17437 0.68 0.774618
Target:  5'- gCGCCGCCGgcgcucGGgcCCGCgACCgaGGUCg -3'
miRNA:   3'- aGCGGUGGC------UCaaGGUGgUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 94019 0.68 0.774618
Target:  5'- -gGCCGgCGGGUUCCGCCGgCgGGcCc -3'
miRNA:   3'- agCGGUgGCUCAAGGUGGUgGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 82252 0.68 0.774618
Target:  5'- aUCGCCACCG----UCACCGCCaUGGa- -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGG-ACCag -5'
10793 5' -57.8 NC_002794.1 + 44903 0.68 0.774618
Target:  5'- cUGCCGCCGAucUCCuUgGCCUcGGUCa -3'
miRNA:   3'- aGCGGUGGCUcaAGGuGgUGGA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 12176 0.69 0.765483
Target:  5'- gUCGCCGCCGAcgccgCCGCgGCCgGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa--GGUGgUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 12849 0.69 0.756237
Target:  5'- aCGaCACCGAGUgggggACCACCUGGg- -3'
miRNA:   3'- aGCgGUGGCUCAagg--UGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 122151 0.69 0.756237
Target:  5'- aCGCCgGCCGuG-UCCgACUACCUGGcCg -3'
miRNA:   3'- aGCGG-UGGCuCaAGG-UGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 57608 0.69 0.756237
Target:  5'- -gGCCACCGAGaaggcggCCgACgACCUGGcCg -3'
miRNA:   3'- agCGGUGGCUCaa-----GG-UGgUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 134613 0.69 0.756237
Target:  5'- aUC-CCGCCGAGUUgaccgCCAUCGCCUgccGGUUc -3'
miRNA:   3'- -AGcGGUGGCUCAA-----GGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 82583 0.69 0.754375
Target:  5'- aCGCCGCCGAGacggagacccucUCCGCgGCCgaaGUCa -3'
miRNA:   3'- aGCGGUGGCUCa-----------AGGUGgUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 185923 0.69 0.746887
Target:  5'- cUCGCCACCGccggCCACCcGCCaGGcUCg -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGG-UGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 105486 0.69 0.746887
Target:  5'- gUCGUCuCCGGucGUggagCCGCCGCCgccGGUCg -3'
miRNA:   3'- -AGCGGuGGCU--CAa---GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 11442 0.69 0.737442
Target:  5'- aCGCC-CCGAGcucgCCGCCACC-GG-Cg -3'
miRNA:   3'- aGCGGuGGCUCaa--GGUGGUGGaCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.