miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 8110 0.67 0.858054
Target:  5'- gCGCCACCGAGcgggCgGCgGCCUccucGGUg -3'
miRNA:   3'- aGCGGUGGCUCaa--GgUGgUGGA----CCAg -5'
10793 5' -57.8 NC_002794.1 + 11442 0.69 0.737442
Target:  5'- aCGCC-CCGAGcucgCCGCCACC-GG-Cg -3'
miRNA:   3'- aGCGGuGGCUCaa--GGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 11538 0.68 0.801267
Target:  5'- -gGCgACCGAGgaCCGCgGC-UGGUCg -3'
miRNA:   3'- agCGgUGGCUCaaGGUGgUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 11788 0.67 0.826618
Target:  5'- aUCGCCGCgGuGUccguggcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGCGGUGgCuCAa-------GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 12176 0.69 0.765483
Target:  5'- gUCGCCGCCGAcgccgCCGCgGCCgGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa--GGUGgUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 12272 0.66 0.879631
Target:  5'- aCGUCuCCGGGuUUCCG-CGCCUGGg- -3'
miRNA:   3'- aGCGGuGGCUC-AAGGUgGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 12849 0.69 0.756237
Target:  5'- aCGaCACCGAGUgggggACCACCUGGg- -3'
miRNA:   3'- aGCgGUGGCUCAagg--UGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 12902 0.66 0.864716
Target:  5'- cCGCUcgacuggGCCGAGU---ACCGCCUGGcCg -3'
miRNA:   3'- aGCGG-------UGGCUCAaggUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 13860 0.7 0.698883
Target:  5'- gUCGCCGCCGccgcgacccGGUUCUccgagcGCCGCCcugUGGUUc -3'
miRNA:   3'- -AGCGGUGGC---------UCAAGG------UGGUGG---ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 15381 0.68 0.774618
Target:  5'- cCGCauCACCGAGUUCaaccaCACgCACCUGGn- -3'
miRNA:   3'- aGCG--GUGGCUCAAG-----GUG-GUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 15413 0.78 0.27331
Target:  5'- cCGCCAUCGAGUgCCACCACC-GGa- -3'
miRNA:   3'- aGCGGUGGCUCAaGGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 16484 0.67 0.818325
Target:  5'- cCGCCGCCGcc-UCCGCCGCCa---- -3'
miRNA:   3'- aGCGGUGGCucaAGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 16508 0.66 0.89934
Target:  5'- cCGCCGCCGuccccggcGUcgCCACCGCCguccccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCu-------CAa-GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 16571 0.68 0.801267
Target:  5'- cCGCCGCCGccaccaCCGCCGCCgccGUCu -3'
miRNA:   3'- aGCGGUGGCucaa--GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 16934 0.69 0.718302
Target:  5'- gUCGgCGCCGAGccgCCACCGCCUc--- -3'
miRNA:   3'- -AGCgGUGGCUCaa-GGUGGUGGAccag -5'
10793 5' -57.8 NC_002794.1 + 16969 0.66 0.879631
Target:  5'- cUCGUCGCCGAGcccgUUCAUCAUCUacccGUCa -3'
miRNA:   3'- -AGCGGUGGCUCa---AGGUGGUGGAc---CAG- -5'
10793 5' -57.8 NC_002794.1 + 17230 0.67 0.850469
Target:  5'- cCGCCACCGccg-CCACCACCcu-UCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGaccAG- -5'
10793 5' -57.8 NC_002794.1 + 17270 0.74 0.439305
Target:  5'- cUCGUCAcCCGGGcacgCCGCCGCCgacGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaa--GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 17437 0.68 0.774618
Target:  5'- gCGCCGCCGgcgcucGGgcCCGCgACCgaGGUCg -3'
miRNA:   3'- aGCGGUGGC------UCaaGGUGgUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 17659 0.7 0.708623
Target:  5'- cCGCCACCGccg-CCACCGCCgccGGcCc -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGa--CCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.