miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 21884 0.74 0.439305
Target:  5'- -gGCCGCgGGGUgUCCGCgGCCUGcGUCg -3'
miRNA:   3'- agCGGUGgCUCA-AGGUGgUGGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 28690 0.67 0.818325
Target:  5'- gUCGCCGCCGccGUUgCugCugCUGccGUCg -3'
miRNA:   3'- -AGCGGUGGCu-CAAgGugGugGAC--CAG- -5'
10793 5' -57.8 NC_002794.1 + 31341 0.66 0.87264
Target:  5'- gCGcCCGCCGuG-UCCGCCGCCcgcucGUCg -3'
miRNA:   3'- aGC-GGUGGCuCaAGGUGGUGGac---CAG- -5'
10793 5' -57.8 NC_002794.1 + 33798 0.7 0.679253
Target:  5'- cCGCCACCaGaAGUUCUGCCAgCUGcUCa -3'
miRNA:   3'- aGCGGUGG-C-UCAAGGUGGUgGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 38502 0.68 0.783632
Target:  5'- gCGgCGCCG-GUcgCCGCCGCCUccgcgaucccaGGUCg -3'
miRNA:   3'- aGCgGUGGCuCAa-GGUGGUGGA-----------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 39350 0.73 0.531453
Target:  5'- gUGCgCGCUGGGcUUCGCCACCaUGGUCu -3'
miRNA:   3'- aGCG-GUGGCUCaAGGUGGUGG-ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 40345 0.66 0.892985
Target:  5'- gCGCCACCGGcGg--CGCCGCCUcucGUCu -3'
miRNA:   3'- aGCGGUGGCU-CaagGUGGUGGAc--CAG- -5'
10793 5' -57.8 NC_002794.1 + 42205 0.67 0.826618
Target:  5'- cUCGCCGCCGccggUCUGCCG-CUGGaUCa -3'
miRNA:   3'- -AGCGGUGGCuca-AGGUGGUgGACC-AG- -5'
10793 5' -57.8 NC_002794.1 + 44903 0.68 0.774618
Target:  5'- cUGCCGCCGAucUCCuUgGCCUcGGUCa -3'
miRNA:   3'- aGCGGUGGCUcaAGGuGgUGGA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 46974 0.67 0.848157
Target:  5'- -aGCCACCGuGUUCCucgucccCCGCCggcacggcaagacgUGGUUc -3'
miRNA:   3'- agCGGUGGCuCAAGGu------GGUGG--------------ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 49464 0.74 0.457037
Target:  5'- gCGCCGCCGuGacCgGCCGCCgcgGGUCu -3'
miRNA:   3'- aGCGGUGGCuCaaGgUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 50712 0.67 0.826618
Target:  5'- uUCGCCGCCucGcgUUCGCCGCCcGGg- -3'
miRNA:   3'- -AGCGGUGGcuCa-AGGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 52909 0.7 0.698883
Target:  5'- cCGCCGCCGucg-CCGCCGCC--GUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 53605 0.66 0.892985
Target:  5'- gCGUCACCGGG--CCGCCGCagcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGgacCAG- -5'
10793 5' -57.8 NC_002794.1 + 56556 0.66 0.892985
Target:  5'- cUCGCCGCCGccc-CCGCCGCCg---- -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 57608 0.69 0.756237
Target:  5'- -gGCCACCGAGaaggcggCCgACgACCUGGcCg -3'
miRNA:   3'- agCGGUGGCUCaa-----GG-UGgUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 58010 0.76 0.372545
Target:  5'- gUCGCCGCCGGGg-CCGCCGCC-GG-Cg -3'
miRNA:   3'- -AGCGGUGGCUCaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 58430 0.66 0.865446
Target:  5'- cCGCCagacGCCGAGg-CCACgcugCGCCUGGcCg -3'
miRNA:   3'- aGCGG----UGGCUCaaGGUG----GUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 59472 0.66 0.879631
Target:  5'- cCGCCGCUaccucgagGAGUUCCcgcACUACCUGcGcCa -3'
miRNA:   3'- aGCGGUGG--------CUCAAGG---UGGUGGAC-CaG- -5'
10793 5' -57.8 NC_002794.1 + 60759 0.67 0.834745
Target:  5'- cUCGaCCuCUGAGcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGC-GGuGGCUCaaGGUGGUGGac-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.