miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 61222 0.66 0.87264
Target:  5'- cUCGCCAUgGAGaucaaCCAacggCugCUGGUCa -3'
miRNA:   3'- -AGCGGUGgCUCaa---GGUg---GugGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 61428 0.66 0.891036
Target:  5'- -gGCguCCGAGcUggugcagacguacgUCCGCCGCCUGGcCc -3'
miRNA:   3'- agCGguGGCUC-A--------------AGGUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 61956 0.71 0.619734
Target:  5'- cCGCCcCCGAGgccagcggCCGCCugCUgcaGGUCa -3'
miRNA:   3'- aGCGGuGGCUCaa------GGUGGugGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 62239 0.68 0.801267
Target:  5'- cCGCCugacGCUGAacguGUUCgCGCUgcGCCUGGUCa -3'
miRNA:   3'- aGCGG----UGGCU----CAAG-GUGG--UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 62589 0.7 0.708623
Target:  5'- cCGCCGCCGAcgccaGggCCACCGCCgccuucGGa- -3'
miRNA:   3'- aGCGGUGGCU-----CaaGGUGGUGGa-----CCag -5'
10793 5' -57.8 NC_002794.1 + 68314 0.75 0.396764
Target:  5'- -gGCgGCCGAcgcGUUCCGCgGCCUGGUg -3'
miRNA:   3'- agCGgUGGCU---CAAGGUGgUGGACCAg -5'
10793 5' -57.8 NC_002794.1 + 69283 0.67 0.858054
Target:  5'- cCGCCGCCGAacgCCGCCACUg---- -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 69799 0.68 0.801267
Target:  5'- gCGCCGCCGcGUagcCCGCCGCCgcgaccgGcGUCc -3'
miRNA:   3'- aGCGGUGGCuCAa--GGUGGUGGa------C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 70588 0.74 0.448122
Target:  5'- gUCGCCgACUGcGUcaacauauauUCCACCACCgGGUCg -3'
miRNA:   3'- -AGCGG-UGGCuCA----------AGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 70629 0.66 0.87264
Target:  5'- cCGCC-CCG-GUcgcaCCGCCACCaGGUUc -3'
miRNA:   3'- aGCGGuGGCuCAa---GGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 71063 0.69 0.718302
Target:  5'- cCGCCGCCGcAGca--GCCGCCgGGUCc -3'
miRNA:   3'- aGCGGUGGC-UCaaggUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 71737 0.66 0.890382
Target:  5'- cCGCCacGCCGAaggCCGCCGCCggcucuuccgaccGGUCc -3'
miRNA:   3'- aGCGG--UGGCUcaaGGUGGUGGa------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 72903 0.7 0.70668
Target:  5'- cUCGCCACCGucgcgcucgCCGCCGCCgucGGa- -3'
miRNA:   3'- -AGCGGUGGCucaa-----GGUGGUGGa--CCag -5'
10793 5' -57.8 NC_002794.1 + 73937 0.67 0.826618
Target:  5'- gUCGCCGCCGAa---CGCUuCCUGGcCa -3'
miRNA:   3'- -AGCGGUGGCUcaagGUGGuGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 73975 0.75 0.405059
Target:  5'- cUCGCCGCCGcuacUCCGCUacgacgACCUGGUCc -3'
miRNA:   3'- -AGCGGUGGCuca-AGGUGG------UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 74128 0.68 0.774618
Target:  5'- -gGCCGCCG----CCGCCGucucCCUGGUCg -3'
miRNA:   3'- agCGGUGGCucaaGGUGGU----GGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 74912 0.71 0.607818
Target:  5'- aCGCCACCGuccucgaagUCACCGacuuCCUGGUCg -3'
miRNA:   3'- aGCGGUGGCucaa-----GGUGGU----GGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 75361 0.68 0.809872
Target:  5'- uUCGCCACCGAcccgCCGCgGCCggcGG-Cg -3'
miRNA:   3'- -AGCGGUGGCUcaa-GGUGgUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 76959 0.68 0.809018
Target:  5'- aCGCCGuCCGGccGgcCCGCCgagcucgACCUGGUCc -3'
miRNA:   3'- aGCGGU-GGCU--CaaGGUGG-------UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 77964 0.67 0.834745
Target:  5'- cCGUCGCCGAGccgacUCCuCCGCCUcGGa- -3'
miRNA:   3'- aGCGGUGGCUCa----AGGuGGUGGA-CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.