Results 61 - 80 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 79128 | 0.66 | 0.89934 |
Target: 5'- uUCGCCACCGAGUaCgACgCGCCc---- -3' miRNA: 3'- -AGCGGUGGCUCAaGgUG-GUGGaccag -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 79479 | 1.09 | 0.00246 |
Target: 5'- gUCGCCACCGAGUUCCACCACCUGGUCu -3' miRNA: 3'- -AGCGGUGGCUCAAGGUGGUGGACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 80957 | 0.67 | 0.826618 |
Target: 5'- gCGCCAagcUCGGGUUCCgcgucauccuGCCGCugcccuccgguCUGGUCa -3' miRNA: 3'- aGCGGU---GGCUCAAGG----------UGGUG-----------GACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 81027 | 0.68 | 0.783632 |
Target: 5'- cCGCaCGCuCGugcGGaUCCucaACCACCUGGUCa -3' miRNA: 3'- aGCG-GUG-GC---UCaAGG---UGGUGGACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 82252 | 0.68 | 0.774618 |
Target: 5'- aUCGCCACCG----UCACCGCCaUGGa- -3' miRNA: 3'- -AGCGGUGGCucaaGGUGGUGG-ACCag -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 82583 | 0.69 | 0.754375 |
Target: 5'- aCGCCGCCGAGacggagacccucUCCGCgGCCgaaGUCa -3' miRNA: 3'- aGCGGUGGCUCa-----------AGGUGgUGGac-CAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 82737 | 0.66 | 0.879631 |
Target: 5'- cUCGCCG-CGAGccgCCGCCACCgccgcGGa- -3' miRNA: 3'- -AGCGGUgGCUCaa-GGUGGUGGa----CCag -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 83638 | 0.67 | 0.850469 |
Target: 5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3' miRNA: 3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 83785 | 0.68 | 0.792518 |
Target: 5'- cCGCCGCCGcg-UCCGCCGuCCUGc-- -3' miRNA: 3'- aGCGGUGGCucaAGGUGGU-GGACcag -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 91610 | 0.67 | 0.829889 |
Target: 5'- gCGCgGCCGAGggCCacgccgaccuccugcGCCGCCUG-UCc -3' miRNA: 3'- aGCGgUGGCUCaaGG---------------UGGUGGACcAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 93695 | 0.66 | 0.879631 |
Target: 5'- uUCGUC-CUGg---CCACgCGCCUGGUCg -3' miRNA: 3'- -AGCGGuGGCucaaGGUG-GUGGACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 94019 | 0.68 | 0.774618 |
Target: 5'- -gGCCGgCGGGUUCCGCCGgCgGGcCc -3' miRNA: 3'- agCGGUgGCUCAAGGUGGUgGaCCaG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 96195 | 0.67 | 0.850469 |
Target: 5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3' miRNA: 3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 99415 | 0.68 | 0.782736 |
Target: 5'- cCGCCGucgcagcaggguCCGGGUuuguuggaccggaUCCGCCGCCgggGGUa -3' miRNA: 3'- aGCGGU------------GGCUCA-------------AGGUGGUGGa--CCAg -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 99910 | 0.66 | 0.865446 |
Target: 5'- cCGCCACCG-GaUCaCGCCgugcgGCgUGGUCu -3' miRNA: 3'- aGCGGUGGCuCaAG-GUGG-----UGgACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 103845 | 0.66 | 0.892985 |
Target: 5'- cUUGaCCACCGAGcgggCCGCCGCCg---- -3' miRNA: 3'- -AGC-GGUGGCUCaa--GGUGGUGGaccag -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 105486 | 0.69 | 0.746887 |
Target: 5'- gUCGUCuCCGGucGUggagCCGCCGCCgccGGUCg -3' miRNA: 3'- -AGCGGuGGCU--CAa---GGUGGUGGa--CCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 108592 | 0.7 | 0.68909 |
Target: 5'- aCGCUAUCGcGGcgCgGCCgACCUGGUCg -3' miRNA: 3'- aGCGGUGGC-UCaaGgUGG-UGGACCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 110321 | 0.67 | 0.858054 |
Target: 5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3' miRNA: 3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5' |
|||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 111625 | 0.73 | 0.512385 |
Target: 5'- -gGCCGCCGcgg-CCGCCGCC-GGUCg -3' miRNA: 3'- agCGGUGGCucaaGGUGGUGGaCCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home