miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 194397 0.67 0.850469
Target:  5'- gCGCCGCCcGGUcguucgcgUCCGCCACCgccGUa -3'
miRNA:   3'- aGCGGUGGcUCA--------AGGUGGUGGac-CAg -5'
10793 5' -57.8 NC_002794.1 + 194058 0.73 0.531453
Target:  5'- cCGCCGCCGAGag-CGCCGCCUucGUCg -3'
miRNA:   3'- aGCGGUGGCUCaagGUGGUGGAc-CAG- -5'
10793 5' -57.8 NC_002794.1 + 193956 0.7 0.68909
Target:  5'- cCGCCACCGccg-CCACCGCC--GUCa -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGacCAG- -5'
10793 5' -57.8 NC_002794.1 + 192370 0.67 0.829889
Target:  5'- cCGCCgACCGAGcgcgggcugaccgCCACCGCCgcgccggGGUa -3'
miRNA:   3'- aGCGG-UGGCUCaa-----------GGUGGUGGa------CCAg -5'
10793 5' -57.8 NC_002794.1 + 191502 0.72 0.560513
Target:  5'- cCGCCACCGAGaggugCCAgCGCCggGcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaa---GGUgGUGGa-C-CAG- -5'
10793 5' -57.8 NC_002794.1 + 190677 0.7 0.66344
Target:  5'- gCGCCGCCGGGUcUCCACgcaCACCUcccggcgcagcgucgGGUUc -3'
miRNA:   3'- aGCGGUGGCUCA-AGGUG---GUGGA---------------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 189417 0.69 0.727911
Target:  5'- -gGCCAgCGGGUUCUGCUGCCgcaGGUa -3'
miRNA:   3'- agCGGUgGCUCAAGGUGGUGGa--CCAg -5'
10793 5' -57.8 NC_002794.1 + 187748 0.66 0.886414
Target:  5'- gUCGCCAucuCCGAacgCCGCCggcGCC-GGUCg -3'
miRNA:   3'- -AGCGGU---GGCUcaaGGUGG---UGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 187537 0.69 0.725995
Target:  5'- cCGCCGCCGcgaccgccgCCACCGCCgccGUCg -3'
miRNA:   3'- aGCGGUGGCucaa-----GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 186984 0.67 0.858054
Target:  5'- gCGCgCACC-AGcUCCGCCGgCUGcGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUgGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 186224 0.66 0.865446
Target:  5'- -gGCgGuCCGGGUcCCGCCACCaGuGUCg -3'
miRNA:   3'- agCGgU-GGCUCAaGGUGGUGGaC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 186102 0.76 0.349351
Target:  5'- uUCGUCGCCGucg-CCGCCGCCgGGUCc -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 185986 0.67 0.826618
Target:  5'- cCGCCACCGuc-UCCuCCGCCgGGcUCc -3'
miRNA:   3'- aGCGGUGGCucaAGGuGGUGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 185923 0.69 0.746887
Target:  5'- cUCGCCACCGccggCCACCcGCCaGGcUCg -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGG-UGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 185272 0.73 0.506718
Target:  5'- cCGCCgGCCGAGUgggCCgccggacaggucagcACCACCcGGUCg -3'
miRNA:   3'- aGCGG-UGGCUCAa--GG---------------UGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 184002 0.72 0.550772
Target:  5'- cCGCCACCGuG-UCCACCAUCgccGGcCg -3'
miRNA:   3'- aGCGGUGGCuCaAGGUGGUGGa--CCaG- -5'
10793 5' -57.8 NC_002794.1 + 183900 0.69 0.718302
Target:  5'- cCGCCGCCGA----CGCCAUCUGGg- -3'
miRNA:   3'- aGCGGUGGCUcaagGUGGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 183860 0.66 0.879631
Target:  5'- gUCGCgGCCGucGGggCCACCGCCg---- -3'
miRNA:   3'- -AGCGgUGGC--UCaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 182772 0.7 0.659476
Target:  5'- cCGCaCGCCcGG-UCCACCACCUgccagcgcacGGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUGGA----------CCAG- -5'
10793 5' -57.8 NC_002794.1 + 181536 0.7 0.698883
Target:  5'- cCGCCGCCGGcGggCCGgCGCuCUcGGUCg -3'
miRNA:   3'- aGCGGUGGCU-CaaGGUgGUG-GA-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.