miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 180844 0.66 0.87264
Target:  5'- gCGUCACCGucgUCUACgGCCUcGUCg -3'
miRNA:   3'- aGCGGUGGCucaAGGUGgUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 179429 0.67 0.819162
Target:  5'- -gGCC-CCGGGcgcggaggcguggaCCACCGCCUcGGUCg -3'
miRNA:   3'- agCGGuGGCUCaa------------GGUGGUGGA-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 156705 0.66 0.879631
Target:  5'- cCGCCGCCGuc--CCACCGaucGGUCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUggaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 152696 0.73 0.493604
Target:  5'- gCGCCuACCGuGUcUCCGCCACCUGa-- -3'
miRNA:   3'- aGCGG-UGGCuCA-AGGUGGUGGACcag -5'
10793 5' -57.8 NC_002794.1 + 151642 0.69 0.718302
Target:  5'- cUCGCCGCCGGccggcacuuGgcUCGCCGCCgGGUg -3'
miRNA:   3'- -AGCGGUGGCU---------CaaGGUGGUGGaCCAg -5'
10793 5' -57.8 NC_002794.1 + 150034 0.74 0.439305
Target:  5'- -gGCCGCCGAGUggagCCGCUACCgacugcGGUg -3'
miRNA:   3'- agCGGUGGCUCAa---GGUGGUGGa-----CCAg -5'
10793 5' -57.8 NC_002794.1 + 149242 0.69 0.727911
Target:  5'- cCGUCGCCGGGgucgcggcgCCACCACCcucGUCc -3'
miRNA:   3'- aGCGGUGGCUCaa-------GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 147505 0.71 0.609803
Target:  5'- -aGCuuCACCGAGUUCCuCgGCCUGGg- -3'
miRNA:   3'- agCG--GUGGCUCAAGGuGgUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 145863 0.71 0.609803
Target:  5'- -aGCCGCCGAGggCCGCgACC-GGa- -3'
miRNA:   3'- agCGGUGGCUCaaGGUGgUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 144904 0.7 0.679253
Target:  5'- gCGCCGCUGGGccCCGCCGCC-GG-Ca -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 144494 0.66 0.886414
Target:  5'- cCGCCGCCGA--UCgGgCACCU-GUCg -3'
miRNA:   3'- aGCGGUGGCUcaAGgUgGUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 138020 0.7 0.68909
Target:  5'- aCGCCACC-AGUUCCGaguCgUGGUCg -3'
miRNA:   3'- aGCGGUGGcUCAAGGUgguGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 137575 0.76 0.348595
Target:  5'- gUCGCCGCCGgggccggagugcgGGgagCCGCCGCCggcGGUCg -3'
miRNA:   3'- -AGCGGUGGC-------------UCaa-GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 135996 0.67 0.858054
Target:  5'- uUCGCUGuCCGGG-UCCAguCCGC-UGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaAGGU--GGUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 134613 0.69 0.756237
Target:  5'- aUC-CCGCCGAGUUgaccgCCAUCGCCUgccGGUUc -3'
miRNA:   3'- -AGcGGUGGCUCAA-----GGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 133673 0.67 0.826618
Target:  5'- gUCGCgggguuuugacaUACUggGGGUUCUACCGCCUguaGGUCg -3'
miRNA:   3'- -AGCG------------GUGG--CUCAAGGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 131284 0.72 0.550772
Target:  5'- cCGCCggcGCCGucGcUCCGCCGCCcgUGGUCg -3'
miRNA:   3'- aGCGG---UGGCu-CaAGGUGGUGG--ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 131257 0.69 0.727911
Target:  5'- aCGCCGCCGGca-CCACCGCC-GG-Ca -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 129488 0.66 0.892985
Target:  5'- gUCGCCcgaauCCGGuUUCCgugucGCCGCCgcGGUCg -3'
miRNA:   3'- -AGCGGu----GGCUcAAGG-----UGGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 125966 0.76 0.341851
Target:  5'- cUCGUCGCCGAGUUCCugCugCagcUGGcCa -3'
miRNA:   3'- -AGCGGUGGCUCAAGGugGugG---ACCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.