miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 124402 0.66 0.879631
Target:  5'- gUCGCCGgucgUCGGGgcgCCGuCCGCCgcGGUCu -3'
miRNA:   3'- -AGCGGU----GGCUCaa-GGU-GGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 122151 0.69 0.756237
Target:  5'- aCGCCgGCCGuG-UCCgACUACCUGGcCg -3'
miRNA:   3'- aGCGG-UGGCuCaAGG-UGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 121439 0.67 0.818325
Target:  5'- cCaCCACCGAGaccaCgGCCGCCgucgGGUCg -3'
miRNA:   3'- aGcGGUGGCUCaa--GgUGGUGGa---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 121385 0.67 0.858054
Target:  5'- cCGCCGCCGGGaccgcggCCGgCGCCgGGa- -3'
miRNA:   3'- aGCGGUGGCUCaa-----GGUgGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 121240 0.66 0.89934
Target:  5'- gUCGCCGCUGccg-CCGCCGCCgccgcGGcCu -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGa----CCaG- -5'
10793 5' -57.8 NC_002794.1 + 113929 0.68 0.801267
Target:  5'- -gGCCGCCGAGgcgacgggCCGCUGCCgGGc- -3'
miRNA:   3'- agCGGUGGCUCaa------GGUGGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 111625 0.73 0.512385
Target:  5'- -gGCCGCCGcgg-CCGCCGCC-GGUCg -3'
miRNA:   3'- agCGGUGGCucaaGGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 110321 0.67 0.858054
Target:  5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3'
miRNA:   3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 108592 0.7 0.68909
Target:  5'- aCGCUAUCGcGGcgCgGCCgACCUGGUCg -3'
miRNA:   3'- aGCGGUGGC-UCaaGgUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 105486 0.69 0.746887
Target:  5'- gUCGUCuCCGGucGUggagCCGCCGCCgccGGUCg -3'
miRNA:   3'- -AGCGGuGGCU--CAa---GGUGGUGGa--CCAG- -5'
10793 5' -57.8 NC_002794.1 + 103845 0.66 0.892985
Target:  5'- cUUGaCCACCGAGcgggCCGCCGCCg---- -3'
miRNA:   3'- -AGC-GGUGGCUCaa--GGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 99910 0.66 0.865446
Target:  5'- cCGCCACCG-GaUCaCGCCgugcgGCgUGGUCu -3'
miRNA:   3'- aGCGGUGGCuCaAG-GUGG-----UGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 99415 0.68 0.782736
Target:  5'- cCGCCGucgcagcaggguCCGGGUuuguuggaccggaUCCGCCGCCgggGGUa -3'
miRNA:   3'- aGCGGU------------GGCUCA-------------AGGUGGUGGa--CCAg -5'
10793 5' -57.8 NC_002794.1 + 96195 0.67 0.850469
Target:  5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3'
miRNA:   3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 94019 0.68 0.774618
Target:  5'- -gGCCGgCGGGUUCCGCCGgCgGGcCc -3'
miRNA:   3'- agCGGUgGCUCAAGGUGGUgGaCCaG- -5'
10793 5' -57.8 NC_002794.1 + 93695 0.66 0.879631
Target:  5'- uUCGUC-CUGg---CCACgCGCCUGGUCg -3'
miRNA:   3'- -AGCGGuGGCucaaGGUG-GUGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 91610 0.67 0.829889
Target:  5'- gCGCgGCCGAGggCCacgccgaccuccugcGCCGCCUG-UCc -3'
miRNA:   3'- aGCGgUGGCUCaaGG---------------UGGUGGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 83785 0.68 0.792518
Target:  5'- cCGCCGCCGcg-UCCGCCGuCCUGc-- -3'
miRNA:   3'- aGCGGUGGCucaAGGUGGU-GGACcag -5'
10793 5' -57.8 NC_002794.1 + 83638 0.67 0.850469
Target:  5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3'
miRNA:   3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 82737 0.66 0.879631
Target:  5'- cUCGCCG-CGAGccgCCGCCACCgccgcGGa- -3'
miRNA:   3'- -AGCGGUgGCUCaa-GGUGGUGGa----CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.