Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 82583 | 0.69 | 0.754375 |
Target: 5'- aCGCCGCCGAGacggagacccucUCCGCgGCCgaaGUCa -3' miRNA: 3'- aGCGGUGGCUCa-----------AGGUGgUGGac-CAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 82252 | 0.68 | 0.774618 |
Target: 5'- aUCGCCACCG----UCACCGCCaUGGa- -3' miRNA: 3'- -AGCGGUGGCucaaGGUGGUGG-ACCag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 81027 | 0.68 | 0.783632 |
Target: 5'- cCGCaCGCuCGugcGGaUCCucaACCACCUGGUCa -3' miRNA: 3'- aGCG-GUG-GC---UCaAGG---UGGUGGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 80957 | 0.67 | 0.826618 |
Target: 5'- gCGCCAagcUCGGGUUCCgcgucauccuGCCGCugcccuccgguCUGGUCa -3' miRNA: 3'- aGCGGU---GGCUCAAGG----------UGGUG-----------GACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 79479 | 1.09 | 0.00246 |
Target: 5'- gUCGCCACCGAGUUCCACCACCUGGUCu -3' miRNA: 3'- -AGCGGUGGCUCAAGGUGGUGGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 79128 | 0.66 | 0.89934 |
Target: 5'- uUCGCCACCGAGUaCgACgCGCCc---- -3' miRNA: 3'- -AGCGGUGGCUCAaGgUG-GUGGaccag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 77964 | 0.67 | 0.834745 |
Target: 5'- cCGUCGCCGAGccgacUCCuCCGCCUcGGa- -3' miRNA: 3'- aGCGGUGGCUCa----AGGuGGUGGA-CCag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 76959 | 0.68 | 0.809018 |
Target: 5'- aCGCCGuCCGGccGgcCCGCCgagcucgACCUGGUCc -3' miRNA: 3'- aGCGGU-GGCU--CaaGGUGG-------UGGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 75361 | 0.68 | 0.809872 |
Target: 5'- uUCGCCACCGAcccgCCGCgGCCggcGG-Cg -3' miRNA: 3'- -AGCGGUGGCUcaa-GGUGgUGGa--CCaG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 74912 | 0.71 | 0.607818 |
Target: 5'- aCGCCACCGuccucgaagUCACCGacuuCCUGGUCg -3' miRNA: 3'- aGCGGUGGCucaa-----GGUGGU----GGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 74128 | 0.68 | 0.774618 |
Target: 5'- -gGCCGCCG----CCGCCGucucCCUGGUCg -3' miRNA: 3'- agCGGUGGCucaaGGUGGU----GGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 73975 | 0.75 | 0.405059 |
Target: 5'- cUCGCCGCCGcuacUCCGCUacgacgACCUGGUCc -3' miRNA: 3'- -AGCGGUGGCuca-AGGUGG------UGGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 73937 | 0.67 | 0.826618 |
Target: 5'- gUCGCCGCCGAa---CGCUuCCUGGcCa -3' miRNA: 3'- -AGCGGUGGCUcaagGUGGuGGACCaG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 72903 | 0.7 | 0.70668 |
Target: 5'- cUCGCCACCGucgcgcucgCCGCCGCCgucGGa- -3' miRNA: 3'- -AGCGGUGGCucaa-----GGUGGUGGa--CCag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 71737 | 0.66 | 0.890382 |
Target: 5'- cCGCCacGCCGAaggCCGCCGCCggcucuuccgaccGGUCc -3' miRNA: 3'- aGCGG--UGGCUcaaGGUGGUGGa------------CCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 71063 | 0.69 | 0.718302 |
Target: 5'- cCGCCGCCGcAGca--GCCGCCgGGUCc -3' miRNA: 3'- aGCGGUGGC-UCaaggUGGUGGaCCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 70629 | 0.66 | 0.87264 |
Target: 5'- cCGCC-CCG-GUcgcaCCGCCACCaGGUUc -3' miRNA: 3'- aGCGGuGGCuCAa---GGUGGUGGaCCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 70588 | 0.74 | 0.448122 |
Target: 5'- gUCGCCgACUGcGUcaacauauauUCCACCACCgGGUCg -3' miRNA: 3'- -AGCGG-UGGCuCA----------AGGUGGUGGaCCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 69799 | 0.68 | 0.801267 |
Target: 5'- gCGCCGCCGcGUagcCCGCCGCCgcgaccgGcGUCc -3' miRNA: 3'- aGCGGUGGCuCAa--GGUGGUGGa------C-CAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 69283 | 0.67 | 0.858054 |
Target: 5'- cCGCCGCCGAacgCCGCCACUg---- -3' miRNA: 3'- aGCGGUGGCUcaaGGUGGUGGaccag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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