Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10793 | 5' | -57.8 | NC_002794.1 | + | 180844 | 0.66 | 0.87264 |
Target: 5'- gCGUCACCGucgUCUACgGCCUcGUCg -3' miRNA: 3'- aGCGGUGGCucaAGGUGgUGGAcCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 59472 | 0.66 | 0.879631 |
Target: 5'- cCGCCGCUaccucgagGAGUUCCcgcACUACCUGcGcCa -3' miRNA: 3'- aGCGGUGG--------CUCAAGG---UGGUGGAC-CaG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 61428 | 0.66 | 0.891036 |
Target: 5'- -gGCguCCGAGcUggugcagacguacgUCCGCCGCCUGGcCc -3' miRNA: 3'- agCGguGGCUC-A--------------AGGUGGUGGACCaG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 129488 | 0.66 | 0.892985 |
Target: 5'- gUCGCCcgaauCCGGuUUCCgugucGCCGCCgcGGUCg -3' miRNA: 3'- -AGCGGu----GGCUcAAGG-----UGGUGGa-CCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 56556 | 0.66 | 0.892985 |
Target: 5'- cUCGCCGCCGccc-CCGCCGCCg---- -3' miRNA: 3'- -AGCGGUGGCucaaGGUGGUGGaccag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 53605 | 0.66 | 0.892985 |
Target: 5'- gCGUCACCGGG--CCGCCGCagcGUCg -3' miRNA: 3'- aGCGGUGGCUCaaGGUGGUGgacCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 40345 | 0.66 | 0.892985 |
Target: 5'- gCGCCACCGGcGg--CGCCGCCUcucGUCu -3' miRNA: 3'- aGCGGUGGCU-CaagGUGGUGGAc--CAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 103845 | 0.66 | 0.892985 |
Target: 5'- cUUGaCCACCGAGcgggCCGCCGCCg---- -3' miRNA: 3'- -AGC-GGUGGCUCaa--GGUGGUGGaccag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 79128 | 0.66 | 0.89934 |
Target: 5'- uUCGCCACCGAGUaCgACgCGCCc---- -3' miRNA: 3'- -AGCGGUGGCUCAaGgUG-GUGGaccag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 121240 | 0.66 | 0.89934 |
Target: 5'- gUCGCCGCUGccg-CCGCCGCCgccgcGGcCu -3' miRNA: 3'- -AGCGGUGGCucaaGGUGGUGGa----CCaG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 71737 | 0.66 | 0.890382 |
Target: 5'- cCGCCacGCCGAaggCCGCCGCCggcucuuccgaccGGUCc -3' miRNA: 3'- aGCGG--UGGCUcaaGGUGGUGGa------------CCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 144494 | 0.66 | 0.886414 |
Target: 5'- cCGCCGCCGA--UCgGgCACCU-GUCg -3' miRNA: 3'- aGCGGUGGCUcaAGgUgGUGGAcCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 183860 | 0.66 | 0.879631 |
Target: 5'- gUCGCgGCCGucGGggCCACCGCCg---- -3' miRNA: 3'- -AGCGgUGGC--UCaaGGUGGUGGaccag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 124402 | 0.66 | 0.879631 |
Target: 5'- gUCGCCGgucgUCGGGgcgCCGuCCGCCgcGGUCu -3' miRNA: 3'- -AGCGGU----GGCUCaa-GGU-GGUGGa-CCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 93695 | 0.66 | 0.879631 |
Target: 5'- uUCGUC-CUGg---CCACgCGCCUGGUCg -3' miRNA: 3'- -AGCGGuGGCucaaGGUG-GUGGACCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 12272 | 0.66 | 0.879631 |
Target: 5'- aCGUCuCCGGGuUUCCG-CGCCUGGg- -3' miRNA: 3'- aGCGGuGGCUC-AAGGUgGUGGACCag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 16969 | 0.66 | 0.879631 |
Target: 5'- cUCGUCGCCGAGcccgUUCAUCAUCUacccGUCa -3' miRNA: 3'- -AGCGGUGGCUCa---AGGUGGUGGAc---CAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 82737 | 0.66 | 0.879631 |
Target: 5'- cUCGCCG-CGAGccgCCGCCACCgccgcGGa- -3' miRNA: 3'- -AGCGGUgGCUCaa-GGUGGUGGa----CCag -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 156705 | 0.66 | 0.879631 |
Target: 5'- cCGCCGCCGuc--CCACCGaucGGUCg -3' miRNA: 3'- aGCGGUGGCucaaGGUGGUggaCCAG- -5' |
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10793 | 5' | -57.8 | NC_002794.1 | + | 187748 | 0.66 | 0.886414 |
Target: 5'- gUCGCCAucuCCGAacgCCGCCggcGCC-GGUCg -3' miRNA: 3'- -AGCGGU---GGCUcaaGGUGG---UGGaCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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