miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 53605 0.66 0.892985
Target:  5'- gCGUCACCGGG--CCGCCGCagcGUCg -3'
miRNA:   3'- aGCGGUGGCUCaaGGUGGUGgacCAG- -5'
10793 5' -57.8 NC_002794.1 + 40345 0.66 0.892985
Target:  5'- gCGCCACCGGcGg--CGCCGCCUcucGUCu -3'
miRNA:   3'- aGCGGUGGCU-CaagGUGGUGGAc--CAG- -5'
10793 5' -57.8 NC_002794.1 + 103845 0.66 0.892985
Target:  5'- cUUGaCCACCGAGcgggCCGCCGCCg---- -3'
miRNA:   3'- -AGC-GGUGGCUCaa--GGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 79128 0.66 0.89934
Target:  5'- uUCGCCACCGAGUaCgACgCGCCc---- -3'
miRNA:   3'- -AGCGGUGGCUCAaGgUG-GUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 121240 0.66 0.89934
Target:  5'- gUCGCCGCUGccg-CCGCCGCCgccgcGGcCu -3'
miRNA:   3'- -AGCGGUGGCucaaGGUGGUGGa----CCaG- -5'
10793 5' -57.8 NC_002794.1 + 16969 0.66 0.879631
Target:  5'- cUCGUCGCCGAGcccgUUCAUCAUCUacccGUCa -3'
miRNA:   3'- -AGCGGUGGCUCa---AGGUGGUGGAc---CAG- -5'
10793 5' -57.8 NC_002794.1 + 12272 0.66 0.879631
Target:  5'- aCGUCuCCGGGuUUCCG-CGCCUGGg- -3'
miRNA:   3'- aGCGGuGGCUC-AAGGUgGUGGACCag -5'
10793 5' -57.8 NC_002794.1 + 58430 0.66 0.865446
Target:  5'- cCGCCagacGCCGAGg-CCACgcugCGCCUGGcCg -3'
miRNA:   3'- aGCGG----UGGCUCaaGGUG----GUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 12902 0.66 0.864716
Target:  5'- cCGCUcgacuggGCCGAGU---ACCGCCUGGcCg -3'
miRNA:   3'- aGCGG-------UGGCUCAaggUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 186984 0.67 0.858054
Target:  5'- gCGCgCACC-AGcUCCGCCGgCUGcGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUgGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 99910 0.66 0.865446
Target:  5'- cCGCCACCG-GaUCaCGCCgugcgGCgUGGUCu -3'
miRNA:   3'- aGCGGUGGCuCaAG-GUGG-----UGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 31341 0.66 0.87264
Target:  5'- gCGcCCGCCGuG-UCCGCCGCCcgcucGUCg -3'
miRNA:   3'- aGC-GGUGGCuCaAGGUGGUGGac---CAG- -5'
10793 5' -57.8 NC_002794.1 + 61222 0.66 0.87264
Target:  5'- cUCGCCAUgGAGaucaaCCAacggCugCUGGUCa -3'
miRNA:   3'- -AGCGGUGgCUCaa---GGUg---GugGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 186224 0.66 0.865446
Target:  5'- -gGCgGuCCGGGUcCCGCCACCaGuGUCg -3'
miRNA:   3'- agCGgU-GGCUCAaGGUGGUGGaC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 70629 0.66 0.87264
Target:  5'- cCGCC-CCG-GUcgcaCCGCCACCaGGUUc -3'
miRNA:   3'- aGCGGuGGCuCAa---GGUGGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 180844 0.66 0.87264
Target:  5'- gCGUCACCGucgUCUACgGCCUcGUCg -3'
miRNA:   3'- aGCGGUGGCucaAGGUGgUGGAcCAG- -5'
10793 5' -57.8 NC_002794.1 + 59472 0.66 0.879631
Target:  5'- cCGCCGCUaccucgagGAGUUCCcgcACUACCUGcGcCa -3'
miRNA:   3'- aGCGGUGG--------CUCAAGG---UGGUGGAC-CaG- -5'
10793 5' -57.8 NC_002794.1 + 183860 0.66 0.879631
Target:  5'- gUCGCgGCCGucGGggCCACCGCCg---- -3'
miRNA:   3'- -AGCGgUGGC--UCaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 124402 0.66 0.879631
Target:  5'- gUCGCCGgucgUCGGGgcgCCGuCCGCCgcGGUCu -3'
miRNA:   3'- -AGCGGU----GGCUCaa-GGU-GGUGGa-CCAG- -5'
10793 5' -57.8 NC_002794.1 + 93695 0.66 0.879631
Target:  5'- uUCGUC-CUGg---CCACgCGCCUGGUCg -3'
miRNA:   3'- -AGCGGuGGCucaaGGUG-GUGGACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.