miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 5' -57.8 NC_002794.1 + 11788 0.67 0.826618
Target:  5'- aUCGCCGCgGuGUccguggcgCCGCCGCCgccGUCg -3'
miRNA:   3'- -AGCGGUGgCuCAa-------GGUGGUGGac-CAG- -5'
10793 5' -57.8 NC_002794.1 + 91610 0.67 0.829889
Target:  5'- gCGCgGCCGAGggCCacgccgaccuccugcGCCGCCUG-UCc -3'
miRNA:   3'- aGCGgUGGCUCaaGG---------------UGGUGGACcAG- -5'
10793 5' -57.8 NC_002794.1 + 185986 0.67 0.826618
Target:  5'- cCGCCACCGuc-UCCuCCGCCgGGcUCc -3'
miRNA:   3'- aGCGGUGGCucaAGGuGGUGGaCC-AG- -5'
10793 5' -57.8 NC_002794.1 + 73937 0.67 0.826618
Target:  5'- gUCGCCGCCGAa---CGCUuCCUGGcCa -3'
miRNA:   3'- -AGCGGUGGCUcaagGUGGuGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 133673 0.67 0.826618
Target:  5'- gUCGCgggguuuugacaUACUggGGGUUCUACCGCCUguaGGUCg -3'
miRNA:   3'- -AGCG------------GUGG--CUCAAGGUGGUGGA---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 80957 0.67 0.826618
Target:  5'- gCGCCAagcUCGGGUUCCgcgucauccuGCCGCugcccuccgguCUGGUCa -3'
miRNA:   3'- aGCGGU---GGCUCAAGG----------UGGUG-----------GACCAG- -5'
10793 5' -57.8 NC_002794.1 + 42205 0.67 0.826618
Target:  5'- cUCGCCGCCGccggUCUGCCG-CUGGaUCa -3'
miRNA:   3'- -AGCGGUGGCuca-AGGUGGUgGACC-AG- -5'
10793 5' -57.8 NC_002794.1 + 17230 0.67 0.850469
Target:  5'- cCGCCACCGccg-CCACCACCcu-UCg -3'
miRNA:   3'- aGCGGUGGCucaaGGUGGUGGaccAG- -5'
10793 5' -57.8 NC_002794.1 + 46974 0.67 0.848157
Target:  5'- -aGCCACCGuGUUCCucgucccCCGCCggcacggcaagacgUGGUUc -3'
miRNA:   3'- agCGGUGGCuCAAGGu------GGUGG--------------ACCAG- -5'
10793 5' -57.8 NC_002794.1 + 96195 0.67 0.850469
Target:  5'- cUGCCgGCCGAGUcccugCCGgCGCUgGGUCa -3'
miRNA:   3'- aGCGG-UGGCUCAa----GGUgGUGGaCCAG- -5'
10793 5' -57.8 NC_002794.1 + 186984 0.67 0.858054
Target:  5'- gCGCgCACC-AGcUCCGCCGgCUGcGUCg -3'
miRNA:   3'- aGCG-GUGGcUCaAGGUGGUgGAC-CAG- -5'
10793 5' -57.8 NC_002794.1 + 12902 0.66 0.864716
Target:  5'- cCGCUcgacuggGCCGAGU---ACCGCCUGGcCg -3'
miRNA:   3'- aGCGG-------UGGCUCAaggUGGUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 58430 0.66 0.865446
Target:  5'- cCGCCagacGCCGAGg-CCACgcugCGCCUGGcCg -3'
miRNA:   3'- aGCGG----UGGCUCaaGGUG----GUGGACCaG- -5'
10793 5' -57.8 NC_002794.1 + 135996 0.67 0.858054
Target:  5'- uUCGCUGuCCGGG-UCCAguCCGC-UGGUCa -3'
miRNA:   3'- -AGCGGU-GGCUCaAGGU--GGUGgACCAG- -5'
10793 5' -57.8 NC_002794.1 + 69283 0.67 0.858054
Target:  5'- cCGCCGCCGAacgCCGCCACUg---- -3'
miRNA:   3'- aGCGGUGGCUcaaGGUGGUGGaccag -5'
10793 5' -57.8 NC_002794.1 + 110321 0.67 0.858054
Target:  5'- cUCGCCGCCGcGa--CGCCGCgCggggGGUCu -3'
miRNA:   3'- -AGCGGUGGCuCaagGUGGUG-Ga---CCAG- -5'
10793 5' -57.8 NC_002794.1 + 121385 0.67 0.858054
Target:  5'- cCGCCGCCGGGaccgcggCCGgCGCCgGGa- -3'
miRNA:   3'- aGCGGUGGCUCaa-----GGUgGUGGaCCag -5'
10793 5' -57.8 NC_002794.1 + 8110 0.67 0.858054
Target:  5'- gCGCCACCGAGcgggCgGCgGCCUccucGGUg -3'
miRNA:   3'- aGCGGUGGCUCaa--GgUGgUGGA----CCAg -5'
10793 5' -57.8 NC_002794.1 + 83638 0.67 0.850469
Target:  5'- aCGCCuACCGcugcGGcgcggUCACCgACCUGGUCu -3'
miRNA:   3'- aGCGG-UGGC----UCaa---GGUGG-UGGACCAG- -5'
10793 5' -57.8 NC_002794.1 + 194397 0.67 0.850469
Target:  5'- gCGCCGCCcGGUcguucgcgUCCGCCACCgccGUa -3'
miRNA:   3'- aGCGGUGGcUCA--------AGGUGGUGGac-CAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.