miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10794 3' -55.2 NC_002794.1 + 81535 0.66 0.951357
Target:  5'- cACGcGcUCGAGCGCUGgaCGgCUGCCg -3'
miRNA:   3'- aUGUuC-AGCUCGCGGCgaGU-GAUGGa -5'
10794 3' -55.2 NC_002794.1 + 131377 0.66 0.947146
Target:  5'- cGCccguGGUCG-GCGCCGCgcccgucaUCACgGCCUc -3'
miRNA:   3'- aUGu---UCAGCuCGCGGCG--------AGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 121045 0.66 0.947146
Target:  5'- gGCGcGUCGGGCGCCGCgaagaaggaCGCgaagaaaACCg -3'
miRNA:   3'- aUGUuCAGCUCGCGGCGa--------GUGa------UGGa -5'
10794 3' -55.2 NC_002794.1 + 184427 0.66 0.945837
Target:  5'- gGCAGGUgcagacuguacaucUGAGCG-CGC-CGCUGCCg -3'
miRNA:   3'- aUGUUCA--------------GCUCGCgGCGaGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 119957 0.66 0.945837
Target:  5'- aGCAGGUCGAGCG-UGCUCuggugguucgacgaGCggaGCCg -3'
miRNA:   3'- aUGUUCAGCUCGCgGCGAG--------------UGa--UGGa -5'
10794 3' -55.2 NC_002794.1 + 34859 0.66 0.942702
Target:  5'- aGCGGGcgccgCGGGCGCCGCggAC-GCCg -3'
miRNA:   3'- aUGUUCa----GCUCGCGGCGagUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 79298 0.66 0.942702
Target:  5'- cUGCGuGGcCGAGCGCCucgauCUCACgGCCUa -3'
miRNA:   3'- -AUGU-UCaGCUCGCGGc----GAGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 69785 0.66 0.938021
Target:  5'- gACGAGccacgaGAGCGCCGC-CGCguaGCCc -3'
miRNA:   3'- aUGUUCag----CUCGCGGCGaGUGa--UGGa -5'
10794 3' -55.2 NC_002794.1 + 107931 0.66 0.938021
Target:  5'- cGCGcGUCGAagaGCgGCUgGCUCGCUACCc -3'
miRNA:   3'- aUGUuCAGCU---CG-CGG-CGAGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 108194 0.66 0.938021
Target:  5'- cUGCGAG-CGGcgcuGCGCCGC-CGCgccgGCCUc -3'
miRNA:   3'- -AUGUUCaGCU----CGCGGCGaGUGa---UGGA- -5'
10794 3' -55.2 NC_002794.1 + 122496 0.67 0.927944
Target:  5'- aACGAGUCG-GCGCCGCagGaggGCUUc -3'
miRNA:   3'- aUGUUCAGCuCGCGGCGagUga-UGGA- -5'
10794 3' -55.2 NC_002794.1 + 131016 0.67 0.927944
Target:  5'- cACGGGUCGguggucgugcGGCGCgGCcgGCUGCCg -3'
miRNA:   3'- aUGUUCAGC----------UCGCGgCGagUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 83173 0.67 0.927944
Target:  5'- cGCucucGGUCGAGCGCgGCuUCGCcAUCa -3'
miRNA:   3'- aUGu---UCAGCUCGCGgCG-AGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 122229 0.67 0.91691
Target:  5'- gAUAAG-CG-GCGCCGgaCGCUGCUg -3'
miRNA:   3'- aUGUUCaGCuCGCGGCgaGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 14706 0.67 0.911035
Target:  5'- gGCGuGggGAGCGCUGCUCGCgGCUUc -3'
miRNA:   3'- aUGUuCagCUCGCGGCGAGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 34335 0.67 0.911035
Target:  5'- cGCAAGgCGAcggccGCGCCGUUCcgcccgcuCUACCUg -3'
miRNA:   3'- aUGUUCaGCU-----CGCGGCGAGu-------GAUGGA- -5'
10794 3' -55.2 NC_002794.1 + 79693 0.67 0.904924
Target:  5'- aGCAGcUCGGGcCGCCGCUCGuguCCUa -3'
miRNA:   3'- aUGUUcAGCUC-GCGGCGAGUgauGGA- -5'
10794 3' -55.2 NC_002794.1 + 112844 0.68 0.891999
Target:  5'- cUGCucGUCGGcGCGCCGCagcaGCUGCUg -3'
miRNA:   3'- -AUGuuCAGCU-CGCGGCGag--UGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 105892 0.68 0.885192
Target:  5'- gUGgGAGagGAGuCGCCGCggcggcggCGCUACCg -3'
miRNA:   3'- -AUgUUCagCUC-GCGGCGa-------GUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 100129 0.68 0.885192
Target:  5'- cUACGGGUaCGGGacgcgGCCGUUCGCcgACCUg -3'
miRNA:   3'- -AUGUUCA-GCUCg----CGGCGAGUGa-UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.