miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10794 3' -55.2 NC_002794.1 + 44212 0.68 0.885192
Target:  5'- gACGuccGGcUCGGGCGCCgaggGCUCGgUGCCg -3'
miRNA:   3'- aUGU---UC-AGCUCGCGG----CGAGUgAUGGa -5'
10794 3' -55.2 NC_002794.1 + 69720 0.68 0.878161
Target:  5'- gGCAccGUCGAGUGCCGCcggagCGCcacgGCCg -3'
miRNA:   3'- aUGUu-CAGCUCGCGGCGa----GUGa---UGGa -5'
10794 3' -55.2 NC_002794.1 + 91563 0.68 0.87091
Target:  5'- cUACGAGcCG-GCGCCGCUgaugaACUACUc -3'
miRNA:   3'- -AUGUUCaGCuCGCGGCGAg----UGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 41871 0.68 0.863445
Target:  5'- gGCAGGgcCGGGCGCUGC-CAC-GCCa -3'
miRNA:   3'- aUGUUCa-GCUCGCGGCGaGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 48155 0.69 0.85577
Target:  5'- gACGAGgcagCG-GCGCCGCuUCAC-GCCg -3'
miRNA:   3'- aUGUUCa---GCuCGCGGCG-AGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 47780 0.69 0.85577
Target:  5'- cGCAGGUCGAGCGgCCGCaguaCACgguCUc -3'
miRNA:   3'- aUGUUCAGCUCGC-GGCGa---GUGau-GGa -5'
10794 3' -55.2 NC_002794.1 + 82978 0.69 0.854992
Target:  5'- cGCAGGUCGcgacgcugaaccuGGCGCCGCaCGCgcCCg -3'
miRNA:   3'- aUGUUCAGC-------------UCGCGGCGaGUGauGGa -5'
10794 3' -55.2 NC_002794.1 + 119006 0.69 0.852643
Target:  5'- gACGAGggggaacacgaagCGGGCGUCG-UCGCUGCCg -3'
miRNA:   3'- aUGUUCa------------GCUCGCGGCgAGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 187963 0.69 0.847893
Target:  5'- cGCGGGaccUCGGGagGCCGCUCAUUGCg- -3'
miRNA:   3'- aUGUUC---AGCUCg-CGGCGAGUGAUGga -5'
10794 3' -55.2 NC_002794.1 + 106260 0.69 0.83982
Target:  5'- aACcGG-CGAGCGCCGCgcgucgCGCcGCCUc -3'
miRNA:   3'- aUGuUCaGCUCGCGGCGa-----GUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 141202 0.69 0.83982
Target:  5'- gGCGAcucuucCGAGCaGCCGCUC-CUGCCa -3'
miRNA:   3'- aUGUUca----GCUCG-CGGCGAGuGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 114626 0.69 0.831558
Target:  5'- aGCAGGUCcucGGCGCggaGCUCgaGCUGCCg -3'
miRNA:   3'- aUGUUCAGc--UCGCGg--CGAG--UGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 61286 0.69 0.823114
Target:  5'- aGCAGGUCc-GCGCCGC-CACcGCCc -3'
miRNA:   3'- aUGUUCAGcuCGCGGCGaGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 187684 0.7 0.805713
Target:  5'- aUGCGGGUCGAGCggcccguugGCCGUcuccgUCACggGCCg -3'
miRNA:   3'- -AUGUUCAGCUCG---------CGGCG-----AGUGa-UGGa -5'
10794 3' -55.2 NC_002794.1 + 12193 0.7 0.796771
Target:  5'- cGC-GGcCGGGCGCCGCUCggACgUGCCg -3'
miRNA:   3'- aUGuUCaGCUCGCGGCGAG--UG-AUGGa -5'
10794 3' -55.2 NC_002794.1 + 55161 0.7 0.769089
Target:  5'- cACGAGUCGAGCGCCGa--GCgggcgACUc -3'
miRNA:   3'- aUGUUCAGCUCGCGGCgagUGa----UGGa -5'
10794 3' -55.2 NC_002794.1 + 133243 0.7 0.769089
Target:  5'- gUGCGAcUCGAGacaGUCGCUCGCUcACCg -3'
miRNA:   3'- -AUGUUcAGCUCg--CGGCGAGUGA-UGGa -5'
10794 3' -55.2 NC_002794.1 + 192623 0.71 0.710675
Target:  5'- gUGCGgacAGUCGGGCgGCCGCUC-CaGCCg -3'
miRNA:   3'- -AUGU---UCAGCUCG-CGGCGAGuGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 78140 0.72 0.68044
Target:  5'- cGCGAGcgcUCGAGaCGCCGCUCGa-GCCg -3'
miRNA:   3'- aUGUUC---AGCUC-GCGGCGAGUgaUGGa -5'
10794 3' -55.2 NC_002794.1 + 183683 0.72 0.66007
Target:  5'- gACGGGUCGAGCGCCcgccgcgcgcgGCggCACaGCCa -3'
miRNA:   3'- aUGUUCAGCUCGCGG-----------CGa-GUGaUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.