miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10794 3' -55.2 NC_002794.1 + 12193 0.7 0.796771
Target:  5'- cGC-GGcCGGGCGCCGCUCggACgUGCCg -3'
miRNA:   3'- aUGuUCaGCUCGCGGCGAG--UG-AUGGa -5'
10794 3' -55.2 NC_002794.1 + 14706 0.67 0.911035
Target:  5'- gGCGuGggGAGCGCUGCUCGCgGCUUc -3'
miRNA:   3'- aUGUuCagCUCGCGGCGAGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 34335 0.67 0.911035
Target:  5'- cGCAAGgCGAcggccGCGCCGUUCcgcccgcuCUACCUg -3'
miRNA:   3'- aUGUUCaGCU-----CGCGGCGAGu-------GAUGGA- -5'
10794 3' -55.2 NC_002794.1 + 34859 0.66 0.942702
Target:  5'- aGCGGGcgccgCGGGCGCCGCggAC-GCCg -3'
miRNA:   3'- aUGUUCa----GCUCGCGGCGagUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 41871 0.68 0.863445
Target:  5'- gGCAGGgcCGGGCGCUGC-CAC-GCCa -3'
miRNA:   3'- aUGUUCa-GCUCGCGGCGaGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 44212 0.68 0.885192
Target:  5'- gACGuccGGcUCGGGCGCCgaggGCUCGgUGCCg -3'
miRNA:   3'- aUGU---UC-AGCUCGCGG----CGAGUgAUGGa -5'
10794 3' -55.2 NC_002794.1 + 47780 0.69 0.85577
Target:  5'- cGCAGGUCGAGCGgCCGCaguaCACgguCUc -3'
miRNA:   3'- aUGUUCAGCUCGC-GGCGa---GUGau-GGa -5'
10794 3' -55.2 NC_002794.1 + 48155 0.69 0.85577
Target:  5'- gACGAGgcagCG-GCGCCGCuUCAC-GCCg -3'
miRNA:   3'- aUGUUCa---GCuCGCGGCG-AGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 55161 0.7 0.769089
Target:  5'- cACGAGUCGAGCGCCGa--GCgggcgACUc -3'
miRNA:   3'- aUGUUCAGCUCGCGGCgagUGa----UGGa -5'
10794 3' -55.2 NC_002794.1 + 61286 0.69 0.823114
Target:  5'- aGCAGGUCc-GCGCCGC-CACcGCCc -3'
miRNA:   3'- aUGUUCAGcuCGCGGCGaGUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 62119 0.73 0.649846
Target:  5'- gUGCGuGUCGAGCGaCCGC-CACggcgACCUc -3'
miRNA:   3'- -AUGUuCAGCUCGC-GGCGaGUGa---UGGA- -5'
10794 3' -55.2 NC_002794.1 + 69720 0.68 0.878161
Target:  5'- gGCAccGUCGAGUGCCGCcggagCGCcacgGCCg -3'
miRNA:   3'- aUGUu-CAGCUCGCGGCGa----GUGa---UGGa -5'
10794 3' -55.2 NC_002794.1 + 69785 0.66 0.938021
Target:  5'- gACGAGccacgaGAGCGCCGC-CGCguaGCCc -3'
miRNA:   3'- aUGUUCag----CUCGCGGCGaGUGa--UGGa -5'
10794 3' -55.2 NC_002794.1 + 77378 1.06 0.005731
Target:  5'- cUACAAGUCGAGCGCCGCUCACUACCUg -3'
miRNA:   3'- -AUGUUCAGCUCGCGGCGAGUGAUGGA- -5'
10794 3' -55.2 NC_002794.1 + 78140 0.72 0.68044
Target:  5'- cGCGAGcgcUCGAGaCGCCGCUCGa-GCCg -3'
miRNA:   3'- aUGUUC---AGCUC-GCGGCGAGUgaUGGa -5'
10794 3' -55.2 NC_002794.1 + 79298 0.66 0.942702
Target:  5'- cUGCGuGGcCGAGCGCCucgauCUCACgGCCUa -3'
miRNA:   3'- -AUGU-UCaGCUCGCGGc----GAGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 79693 0.67 0.904924
Target:  5'- aGCAGcUCGGGcCGCCGCUCGuguCCUa -3'
miRNA:   3'- aUGUUcAGCUC-GCGGCGAGUgauGGA- -5'
10794 3' -55.2 NC_002794.1 + 81535 0.66 0.951357
Target:  5'- cACGcGcUCGAGCGCUGgaCGgCUGCCg -3'
miRNA:   3'- aUGUuC-AGCUCGCGGCgaGU-GAUGGa -5'
10794 3' -55.2 NC_002794.1 + 82978 0.69 0.854992
Target:  5'- cGCAGGUCGcgacgcugaaccuGGCGCCGCaCGCgcCCg -3'
miRNA:   3'- aUGUUCAGC-------------UCGCGGCGaGUGauGGa -5'
10794 3' -55.2 NC_002794.1 + 83173 0.67 0.927944
Target:  5'- cGCucucGGUCGAGCGCgGCuUCGCcAUCa -3'
miRNA:   3'- aUGu---UCAGCUCGCGgCG-AGUGaUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.