Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10794 | 3' | -55.2 | NC_002794.1 | + | 91563 | 0.68 | 0.87091 |
Target: 5'- cUACGAGcCG-GCGCCGCUgaugaACUACUc -3' miRNA: 3'- -AUGUUCaGCuCGCGGCGAg----UGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 93708 | 0.73 | 0.639609 |
Target: 5'- cGCGccuGGUCGAccugcuguuGCGCCGCUCGC-GCCg -3' miRNA: 3'- aUGU---UCAGCU---------CGCGGCGAGUGaUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 100129 | 0.68 | 0.885192 |
Target: 5'- cUACGGGUaCGGGacgcgGCCGUUCGCcgACCUg -3' miRNA: 3'- -AUGUUCA-GCUCg----CGGCGAGUGa-UGGA- -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 105892 | 0.68 | 0.885192 |
Target: 5'- gUGgGAGagGAGuCGCCGCggcggcggCGCUACCg -3' miRNA: 3'- -AUgUUCagCUC-GCGGCGa-------GUGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 106260 | 0.69 | 0.83982 |
Target: 5'- aACcGG-CGAGCGCCGCgcgucgCGCcGCCUc -3' miRNA: 3'- aUGuUCaGCUCGCGGCGa-----GUGaUGGA- -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 107931 | 0.66 | 0.938021 |
Target: 5'- cGCGcGUCGAagaGCgGCUgGCUCGCUACCc -3' miRNA: 3'- aUGUuCAGCU---CG-CGG-CGAGUGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 108194 | 0.66 | 0.938021 |
Target: 5'- cUGCGAG-CGGcgcuGCGCCGC-CGCgccgGCCUc -3' miRNA: 3'- -AUGUUCaGCU----CGCGGCGaGUGa---UGGA- -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 111640 | 0.77 | 0.416024 |
Target: 5'- cGCcGGUCGGGCGCCGCggcCGCgGCCa -3' miRNA: 3'- aUGuUCAGCUCGCGGCGa--GUGaUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 112844 | 0.68 | 0.891999 |
Target: 5'- cUGCucGUCGGcGCGCCGCagcaGCUGCUg -3' miRNA: 3'- -AUGuuCAGCU-CGCGGCGag--UGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 114521 | 0.73 | 0.59868 |
Target: 5'- aGCGAGUCGAGCggcaGCCGCgcgaGCUGCg- -3' miRNA: 3'- aUGUUCAGCUCG----CGGCGag--UGAUGga -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 114626 | 0.69 | 0.831558 |
Target: 5'- aGCAGGUCcucGGCGCggaGCUCgaGCUGCCg -3' miRNA: 3'- aUGUUCAGc--UCGCGg--CGAG--UGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 119006 | 0.69 | 0.852643 |
Target: 5'- gACGAGggggaacacgaagCGGGCGUCG-UCGCUGCCg -3' miRNA: 3'- aUGUUCa------------GCUCGCGGCgAGUGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 119957 | 0.66 | 0.945837 |
Target: 5'- aGCAGGUCGAGCG-UGCUCuggugguucgacgaGCggaGCCg -3' miRNA: 3'- aUGUUCAGCUCGCgGCGAG--------------UGa--UGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 121045 | 0.66 | 0.947146 |
Target: 5'- gGCGcGUCGGGCGCCGCgaagaaggaCGCgaagaaaACCg -3' miRNA: 3'- aUGUuCAGCUCGCGGCGa--------GUGa------UGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 122229 | 0.67 | 0.91691 |
Target: 5'- gAUAAG-CG-GCGCCGgaCGCUGCUg -3' miRNA: 3'- aUGUUCaGCuCGCGGCgaGUGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 122496 | 0.67 | 0.927944 |
Target: 5'- aACGAGUCG-GCGCCGCagGaggGCUUc -3' miRNA: 3'- aUGUUCAGCuCGCGGCGagUga-UGGA- -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 130276 | 0.75 | 0.508655 |
Target: 5'- aGC-GGUUGAGcCGCCGCUCGCUcCCg -3' miRNA: 3'- aUGuUCAGCUC-GCGGCGAGUGAuGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 131016 | 0.67 | 0.927944 |
Target: 5'- cACGGGUCGguggucgugcGGCGCgGCcgGCUGCCg -3' miRNA: 3'- aUGUUCAGC----------UCGCGgCGagUGAUGGa -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 131377 | 0.66 | 0.947146 |
Target: 5'- cGCccguGGUCG-GCGCCGCgcccgucaUCACgGCCUc -3' miRNA: 3'- aUGu---UCAGCuCGCGGCG--------AGUGaUGGA- -5' |
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10794 | 3' | -55.2 | NC_002794.1 | + | 133243 | 0.7 | 0.769089 |
Target: 5'- gUGCGAcUCGAGacaGUCGCUCGCUcACCg -3' miRNA: 3'- -AUGUUcAGCUCg--CGGCGAGUGA-UGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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