miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10794 3' -55.2 NC_002794.1 + 192623 0.71 0.710675
Target:  5'- gUGCGgacAGUCGGGCgGCCGCUC-CaGCCg -3'
miRNA:   3'- -AUGU---UCAGCUCG-CGGCGAGuGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 187963 0.69 0.847893
Target:  5'- cGCGGGaccUCGGGagGCCGCUCAUUGCg- -3'
miRNA:   3'- aUGUUC---AGCUCg-CGGCGAGUGAUGga -5'
10794 3' -55.2 NC_002794.1 + 187684 0.7 0.805713
Target:  5'- aUGCGGGUCGAGCggcccguugGCCGUcuccgUCACggGCCg -3'
miRNA:   3'- -AUGUUCAGCUCG---------CGGCG-----AGUGa-UGGa -5'
10794 3' -55.2 NC_002794.1 + 184427 0.66 0.945837
Target:  5'- gGCAGGUgcagacuguacaucUGAGCG-CGC-CGCUGCCg -3'
miRNA:   3'- aUGUUCA--------------GCUCGCgGCGaGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 183683 0.72 0.66007
Target:  5'- gACGGGUCGAGCGCCcgccgcgcgcgGCggCACaGCCa -3'
miRNA:   3'- aUGUUCAGCUCGCGG-----------CGa-GUGaUGGa -5'
10794 3' -55.2 NC_002794.1 + 153402 0.72 0.66007
Target:  5'- cGCGAGcugucgCGAGCGCCGCgCGCggaGCCg -3'
miRNA:   3'- aUGUUCa-----GCUCGCGGCGaGUGa--UGGa -5'
10794 3' -55.2 NC_002794.1 + 141202 0.69 0.83982
Target:  5'- gGCGAcucuucCGAGCaGCCGCUC-CUGCCa -3'
miRNA:   3'- aUGUUca----GCUCG-CGGCGAGuGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 133243 0.7 0.769089
Target:  5'- gUGCGAcUCGAGacaGUCGCUCGCUcACCg -3'
miRNA:   3'- -AUGUUcAGCUCg--CGGCGAGUGA-UGGa -5'
10794 3' -55.2 NC_002794.1 + 131377 0.66 0.947146
Target:  5'- cGCccguGGUCG-GCGCCGCgcccgucaUCACgGCCUc -3'
miRNA:   3'- aUGu---UCAGCuCGCGGCG--------AGUGaUGGA- -5'
10794 3' -55.2 NC_002794.1 + 131016 0.67 0.927944
Target:  5'- cACGGGUCGguggucgugcGGCGCgGCcgGCUGCCg -3'
miRNA:   3'- aUGUUCAGC----------UCGCGgCGagUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 130276 0.75 0.508655
Target:  5'- aGC-GGUUGAGcCGCCGCUCGCUcCCg -3'
miRNA:   3'- aUGuUCAGCUC-GCGGCGAGUGAuGGa -5'
10794 3' -55.2 NC_002794.1 + 122496 0.67 0.927944
Target:  5'- aACGAGUCG-GCGCCGCagGaggGCUUc -3'
miRNA:   3'- aUGUUCAGCuCGCGGCGagUga-UGGA- -5'
10794 3' -55.2 NC_002794.1 + 122229 0.67 0.91691
Target:  5'- gAUAAG-CG-GCGCCGgaCGCUGCUg -3'
miRNA:   3'- aUGUUCaGCuCGCGGCgaGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 121045 0.66 0.947146
Target:  5'- gGCGcGUCGGGCGCCGCgaagaaggaCGCgaagaaaACCg -3'
miRNA:   3'- aUGUuCAGCUCGCGGCGa--------GUGa------UGGa -5'
10794 3' -55.2 NC_002794.1 + 119957 0.66 0.945837
Target:  5'- aGCAGGUCGAGCG-UGCUCuggugguucgacgaGCggaGCCg -3'
miRNA:   3'- aUGUUCAGCUCGCgGCGAG--------------UGa--UGGa -5'
10794 3' -55.2 NC_002794.1 + 119006 0.69 0.852643
Target:  5'- gACGAGggggaacacgaagCGGGCGUCG-UCGCUGCCg -3'
miRNA:   3'- aUGUUCa------------GCUCGCGGCgAGUGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 114626 0.69 0.831558
Target:  5'- aGCAGGUCcucGGCGCggaGCUCgaGCUGCCg -3'
miRNA:   3'- aUGUUCAGc--UCGCGg--CGAG--UGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 114521 0.73 0.59868
Target:  5'- aGCGAGUCGAGCggcaGCCGCgcgaGCUGCg- -3'
miRNA:   3'- aUGUUCAGCUCG----CGGCGag--UGAUGga -5'
10794 3' -55.2 NC_002794.1 + 112844 0.68 0.891999
Target:  5'- cUGCucGUCGGcGCGCCGCagcaGCUGCUg -3'
miRNA:   3'- -AUGuuCAGCU-CGCGGCGag--UGAUGGa -5'
10794 3' -55.2 NC_002794.1 + 111640 0.77 0.416024
Target:  5'- cGCcGGUCGGGCGCCGCggcCGCgGCCa -3'
miRNA:   3'- aUGuUCAGCUCGCGGCGa--GUGaUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.