miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 2071 0.65 0.839699
Target:  5'- gAAGuCCGagacgacCGCcGGCcuuAUACGGCGACCGGg -3'
miRNA:   3'- -UUC-GGU-------GUGuCCG---UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 31099 0.65 0.839699
Target:  5'- aAGGCgACguguaaaACAGGUACAUGGCGGaguagagcagcCCGGa -3'
miRNA:   3'- -UUCGgUG-------UGUCCGUGUGCCGCU-----------GGUC- -5'
10795 3' -58.8 NC_002794.1 + 1473 0.66 0.832423
Target:  5'- -uGCCaACACuAGGaaguucgAgGCGGCGACCGGc -3'
miRNA:   3'- uuCGG-UGUG-UCCg------UgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 181944 0.66 0.832423
Target:  5'- gGAGCCGCAgAGGCACuCGuaGAguCCGu -3'
miRNA:   3'- -UUCGGUGUgUCCGUGuGCcgCU--GGUc -5'
10795 3' -58.8 NC_002794.1 + 25354 0.66 0.832423
Target:  5'- cAGCCugAC-GGUGCGCGauaGACCGGa -3'
miRNA:   3'- uUCGGugUGuCCGUGUGCcg-CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 190494 0.66 0.832423
Target:  5'- -cGCCGCcCAGGagauacCACGGCGugcCCAGc -3'
miRNA:   3'- uuCGGUGuGUCCgu----GUGCCGCu--GGUC- -5'
10795 3' -58.8 NC_002794.1 + 132896 0.66 0.832423
Target:  5'- -cGCCGCcCGGaCcUGCGGCGGCCGGu -3'
miRNA:   3'- uuCGGUGuGUCcGuGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 190009 0.66 0.832423
Target:  5'- cGGCC-CGucCGGGUcCAuCGGCGGCCGGu -3'
miRNA:   3'- uUCGGuGU--GUCCGuGU-GCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 40333 0.66 0.832423
Target:  5'- -cGCCGCGCGGacGCGCcacCGGCGGCg-- -3'
miRNA:   3'- uuCGGUGUGUC--CGUGu--GCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 118226 0.66 0.827493
Target:  5'- cGGCCACGCAgcucuggaggaugucGGCGgGCuggaGGuCGGCCGGg -3'
miRNA:   3'- uUCGGUGUGU---------------CCGUgUG----CC-GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 76528 0.66 0.827493
Target:  5'- cAGGCCAC-C-GGC-CGCGGCGccgacgcggucgcgcGCCGGg -3'
miRNA:   3'- -UUCGGUGuGuCCGuGUGCCGC---------------UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 8051 0.66 0.824172
Target:  5'- -cGCCGCACcgucuuggcgGGGCGCcaagACGGUguuccccauGGCCAGg -3'
miRNA:   3'- uuCGGUGUG----------UCCGUG----UGCCG---------CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 14479 0.66 0.824172
Target:  5'- -cGCCGCGCucGCuguuCGCGGCGGCg-- -3'
miRNA:   3'- uuCGGUGUGucCGu---GUGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 75374 0.66 0.824172
Target:  5'- -cGCCGCgGCcGGCG-GCGGCGGCCu- -3'
miRNA:   3'- uuCGGUG-UGuCCGUgUGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 49016 0.66 0.824172
Target:  5'- -cGCCGCGgcGGC-CGCGGCGucguCCGGc -3'
miRNA:   3'- uuCGGUGUguCCGuGUGCCGCu---GGUC- -5'
10795 3' -58.8 NC_002794.1 + 92309 0.66 0.824172
Target:  5'- gGGGCUggGCGCGGGCG-GCGGgGGcCCGGg -3'
miRNA:   3'- -UUCGG--UGUGUCCGUgUGCCgCU-GGUC- -5'
10795 3' -58.8 NC_002794.1 + 102095 0.66 0.824172
Target:  5'- cGAGCCGCcgcccacgguGCGGGuCAUcuACGGCGACa-- -3'
miRNA:   3'- -UUCGGUG----------UGUCC-GUG--UGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 125328 0.66 0.824172
Target:  5'- cGAGCCGgaGCGcGC-CACGGCGcACCGGc -3'
miRNA:   3'- -UUCGGUg-UGUcCGuGUGCCGC-UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 38455 0.66 0.824172
Target:  5'- gGAGCCgGCGC-GGC-CGCGGCGcGCCc- -3'
miRNA:   3'- -UUCGG-UGUGuCCGuGUGCCGC-UGGuc -5'
10795 3' -58.8 NC_002794.1 + 20984 0.66 0.824172
Target:  5'- cAGCgGCGgcGGCAgcgacCGCGGCGGCCAc -3'
miRNA:   3'- uUCGgUGUguCCGU-----GUGCCGCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.