miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 76892 1.05 0.003185
Target:  5'- aAAGCCACACAGGCACACGGCGACCAGc -3'
miRNA:   3'- -UUCGGUGUGUCCGUGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 76788 0.83 0.102031
Target:  5'- cGAGCCGgGCGGGCGaGCGGCGACCAc -3'
miRNA:   3'- -UUCGGUgUGUCCGUgUGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 185005 0.79 0.201291
Target:  5'- cGGCCGCccACGGGacucaGCACGGUGACCAGc -3'
miRNA:   3'- uUCGGUG--UGUCCg----UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 141294 0.78 0.232579
Target:  5'- uAGCCACACGuGGCGCGcCGGCGACg-- -3'
miRNA:   3'- uUCGGUGUGU-CCGUGU-GCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 33646 0.77 0.261695
Target:  5'- -cGCCGCACGGGCGCGCuGaGCGugCAc -3'
miRNA:   3'- uuCGGUGUGUCCGUGUG-C-CGCugGUc -5'
10795 3' -58.8 NC_002794.1 + 120111 0.77 0.267863
Target:  5'- -cGCCGCGCGugacGcGCGCgACGGCGACCGGg -3'
miRNA:   3'- uuCGGUGUGU----C-CGUG-UGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 187143 0.76 0.274148
Target:  5'- uAGCCGCcCAGGUACACGGCGcACguGc -3'
miRNA:   3'- uUCGGUGuGUCCGUGUGCCGC-UGguC- -5'
10795 3' -58.8 NC_002794.1 + 50565 0.76 0.293709
Target:  5'- gAAGCCugucgACACGGcGUGCGCGGCGGCUGGg -3'
miRNA:   3'- -UUCGG-----UGUGUC-CGUGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 187497 0.75 0.314343
Target:  5'- gAGGCCGCGCAGGCGgcCAgGGCGcCCGc -3'
miRNA:   3'- -UUCGGUGUGUCCGU--GUgCCGCuGGUc -5'
10795 3' -58.8 NC_002794.1 + 31038 0.75 0.314343
Target:  5'- aGGGCCgACAgauaGGGCagcgGCACGGCGGCCAGc -3'
miRNA:   3'- -UUCGG-UGUg---UCCG----UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 36187 0.75 0.336054
Target:  5'- cGGGCCGCcaGCAugacguGGCACACGGCcACCAGc -3'
miRNA:   3'- -UUCGGUG--UGU------CCGUGUGCCGcUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 34255 0.75 0.342777
Target:  5'- -uGCCGcCGCAGGCggaccgcGCGCaGGCGGCCAGc -3'
miRNA:   3'- uuCGGU-GUGUCCG-------UGUG-CCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 82955 0.75 0.351126
Target:  5'- -cGCCGCGCAcGGCGCGCacGCGACgCAGg -3'
miRNA:   3'- uuCGGUGUGU-CCGUGUGc-CGCUG-GUC- -5'
10795 3' -58.8 NC_002794.1 + 70644 0.75 0.351126
Target:  5'- -cGCCAC-CAGGUucuuggccucguGCGCGGCGGCCGc -3'
miRNA:   3'- uuCGGUGuGUCCG------------UGUGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 104466 0.74 0.358839
Target:  5'- cGGGCgGCgugugcaggauGCGGGCGgcCACGGCGGCCGGg -3'
miRNA:   3'- -UUCGgUG-----------UGUCCGU--GUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 141964 0.74 0.366671
Target:  5'- cGGCCGggaugaucgaguCGCAGGCGCACGG-GACCGa -3'
miRNA:   3'- uUCGGU------------GUGUCCGUGUGCCgCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 9063 0.74 0.372222
Target:  5'- cGGUgGCGCAGGCgAUccgagacuuggagaGCGGCGACCGGg -3'
miRNA:   3'- uUCGgUGUGUCCG-UG--------------UGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 48929 0.74 0.374619
Target:  5'- -cGCCAgCGcCAGGCGCuCGGCGACCu- -3'
miRNA:   3'- uuCGGU-GU-GUCCGUGuGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 184469 0.74 0.390862
Target:  5'- cGGGCCGCGCGaacGGCGCGCGGgGccCCGGa -3'
miRNA:   3'- -UUCGGUGUGU---CCGUGUGCCgCu-GGUC- -5'
10795 3' -58.8 NC_002794.1 + 116010 0.73 0.399155
Target:  5'- gGAGaCCGCGguGGCgauugGCGCGGgGACCGGa -3'
miRNA:   3'- -UUC-GGUGUguCCG-----UGUGCCgCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.