miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 116010 0.73 0.399155
Target:  5'- gGAGaCCGCGguGGCgauugGCGCGGgGACCGGa -3'
miRNA:   3'- -UUC-GGUGUguCCG-----UGUGCCgCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 78688 0.73 0.407559
Target:  5'- cGGCCGCAUgugcGGCcgACACGGCGccGCCAGa -3'
miRNA:   3'- uUCGGUGUGu---CCG--UGUGCCGC--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 183201 0.73 0.416072
Target:  5'- -cGCCACGCcGGCgGCGCGuucgucgccaGCGACCAGg -3'
miRNA:   3'- uuCGGUGUGuCCG-UGUGC----------CGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 16360 0.73 0.424694
Target:  5'- -cGCCACccGCAcccGcGUGCACGGCGGCCGGg -3'
miRNA:   3'- uuCGGUG--UGU---C-CGUGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 108465 0.73 0.442253
Target:  5'- -cGCCgGCACGGGCcgaGgGGCGACCGGc -3'
miRNA:   3'- uuCGG-UGUGUCCGug-UgCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 47948 0.72 0.460214
Target:  5'- -cGCCGCGCGucccGGCgccgGCugGGCGACCGc -3'
miRNA:   3'- uuCGGUGUGU----CCG----UGugCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 59304 0.72 0.469338
Target:  5'- -cGCCGCGCAGcGC-CACGGCGcGCCc- -3'
miRNA:   3'- uuCGGUGUGUC-CGuGUGCCGC-UGGuc -5'
10795 3' -58.8 NC_002794.1 + 186276 0.72 0.469338
Target:  5'- -cGCCugGCGcGGCgGCACcGCGGCCAGg -3'
miRNA:   3'- uuCGGugUGU-CCG-UGUGcCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 116129 0.72 0.469338
Target:  5'- -cGCCGCGgcGGCGgcgGCGGCGGCCAGg -3'
miRNA:   3'- uuCGGUGUguCCGUg--UGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 188522 0.72 0.478555
Target:  5'- aAGGCCccgaucucgaaGCGCAGGUGuCGCGGCGGCgGGu -3'
miRNA:   3'- -UUCGG-----------UGUGUCCGU-GUGCCGCUGgUC- -5'
10795 3' -58.8 NC_002794.1 + 145740 0.72 0.478555
Target:  5'- cGGCgGCGCcGGCAUcgACGGCGACCc- -3'
miRNA:   3'- uUCGgUGUGuCCGUG--UGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 32563 0.72 0.487859
Target:  5'- cAGCCGCggAUAGucGCGCGCGGCGguGCCGGg -3'
miRNA:   3'- uUCGGUG--UGUC--CGUGUGCCGC--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 184590 0.72 0.497248
Target:  5'- cGGCCACGCGcGGC-CGCGGgaucggcaaCGGCCAGc -3'
miRNA:   3'- uUCGGUGUGU-CCGuGUGCC---------GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 49391 0.71 0.506717
Target:  5'- cAGGCCGcCGCcgucGGC-CACGGCGGCCGc -3'
miRNA:   3'- -UUCGGU-GUGu---CCGuGUGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 34722 0.71 0.516262
Target:  5'- -cGCCACG-AGGCGCG-GGCGGCCGc -3'
miRNA:   3'- uuCGGUGUgUCCGUGUgCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 141599 0.71 0.525878
Target:  5'- -cGUCGC-CGGGCgGCuCGGCGACCGGc -3'
miRNA:   3'- uuCGGUGuGUCCG-UGuGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 19443 0.71 0.535561
Target:  5'- cAGGCCccgaGCGGGCACgagcggcgGCGGCGGCgGGa -3'
miRNA:   3'- -UUCGGug--UGUCCGUG--------UGCCGCUGgUC- -5'
10795 3' -58.8 NC_002794.1 + 72543 0.71 0.535561
Target:  5'- -cGCCGCGCGuGGuCGCGCaacGCGGCCGGg -3'
miRNA:   3'- uuCGGUGUGU-CC-GUGUGc--CGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 111568 0.71 0.545306
Target:  5'- -cGCCAgCGCGGuCACuACGGUGGCCAGc -3'
miRNA:   3'- uuCGGU-GUGUCcGUG-UGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 56508 0.71 0.545306
Target:  5'- aAGGCCcCGCGGGCGCucCGGCGcucguuCCGGu -3'
miRNA:   3'- -UUCGGuGUGUCCGUGu-GCCGCu-----GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.