miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 125328 0.66 0.824172
Target:  5'- cGAGCCGgaGCGcGC-CACGGCGcACCGGc -3'
miRNA:   3'- -UUCGGUg-UGUcCGuGUGCCGC-UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 102095 0.66 0.824172
Target:  5'- cGAGCCGCcgcccacgguGCGGGuCAUcuACGGCGACa-- -3'
miRNA:   3'- -UUCGGUG----------UGUCC-GUG--UGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 92309 0.66 0.824172
Target:  5'- gGGGCUggGCGCGGGCG-GCGGgGGcCCGGg -3'
miRNA:   3'- -UUCGG--UGUGUCCGUgUGCCgCU-GGUC- -5'
10795 3' -58.8 NC_002794.1 + 122665 0.66 0.815754
Target:  5'- uGGCgGCGCAGGC-C-CGGCuguGCCGGu -3'
miRNA:   3'- uUCGgUGUGUCCGuGuGCCGc--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 32862 0.66 0.815754
Target:  5'- cGGCCGaGCcGGCGgGCGGCGGCg-- -3'
miRNA:   3'- uUCGGUgUGuCCGUgUGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 26637 0.66 0.815754
Target:  5'- -cGuCCGCGCAccCGgACGGCGGCCGGc -3'
miRNA:   3'- uuC-GGUGUGUccGUgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 136707 0.66 0.815754
Target:  5'- -cGCCcggUGCAGGCGCcgguccCGGCGuCCAGg -3'
miRNA:   3'- uuCGGu--GUGUCCGUGu-----GCCGCuGGUC- -5'
10795 3' -58.8 NC_002794.1 + 95827 0.66 0.815754
Target:  5'- cGGCCGggggaGC-GGCG-GCGGCGGCCGGg -3'
miRNA:   3'- uUCGGUg----UGuCCGUgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 101642 0.66 0.815754
Target:  5'- cGAGCgUGgGCGGGCGgGCGGCGGuuAGc -3'
miRNA:   3'- -UUCG-GUgUGUCCGUgUGCCGCUggUC- -5'
10795 3' -58.8 NC_002794.1 + 179701 0.66 0.815754
Target:  5'- cGGCgACGguGGCgACGcCGGCGGCUAc -3'
miRNA:   3'- uUCGgUGUguCCG-UGU-GCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 128439 0.66 0.815754
Target:  5'- uGGCC-CGC--GCGCACGGCGccuCCGGa -3'
miRNA:   3'- uUCGGuGUGucCGUGUGCCGCu--GGUC- -5'
10795 3' -58.8 NC_002794.1 + 69182 0.66 0.815754
Target:  5'- cGGGCgCugAUuccGGCACGCGGCccgcagcuuGGCCAGc -3'
miRNA:   3'- -UUCG-GugUGu--CCGUGUGCCG---------CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 149243 0.66 0.815754
Target:  5'- -cGUCGC-CGGGguCGCGGCG-CCAc -3'
miRNA:   3'- uuCGGUGuGUCCguGUGCCGCuGGUc -5'
10795 3' -58.8 NC_002794.1 + 136401 0.66 0.815754
Target:  5'- cGGGUCGCGCGuGCGCugaACGGCGGuCCAu -3'
miRNA:   3'- -UUCGGUGUGUcCGUG---UGCCGCU-GGUc -5'
10795 3' -58.8 NC_002794.1 + 53264 0.66 0.814903
Target:  5'- -cGCCGCGCgacaacgGGGCG-GCGaGCGACCAc -3'
miRNA:   3'- uuCGGUGUG-------UCCGUgUGC-CGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 43017 0.66 0.813196
Target:  5'- uAGCUcCGCAGGUcgucggccuccaucGCGCGGCaGGCCGa -3'
miRNA:   3'- uUCGGuGUGUCCG--------------UGUGCCG-CUGGUc -5'
10795 3' -58.8 NC_002794.1 + 263 0.66 0.807174
Target:  5'- -cGCCGCGCGcgcGGaCGCgaggACGGCGGCCc- -3'
miRNA:   3'- uuCGGUGUGU---CC-GUG----UGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 107218 0.66 0.807174
Target:  5'- -cGCCGC-CGGGCgGCGCG-CGACgGGg -3'
miRNA:   3'- uuCGGUGuGUCCG-UGUGCcGCUGgUC- -5'
10795 3' -58.8 NC_002794.1 + 26081 0.66 0.807174
Target:  5'- -cGCCACGCGGGgcaGCGCcgacggccccGGCGAUCGc -3'
miRNA:   3'- uuCGGUGUGUCCg--UGUG----------CCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 55811 0.66 0.807174
Target:  5'- -cGCCggGCGCGGGCGCGCgcugauGGCGAagagCAGc -3'
miRNA:   3'- uuCGG--UGUGUCCGUGUG------CCGCUg---GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.