miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 263 0.66 0.807174
Target:  5'- -cGCCGCGCGcgcGGaCGCgaggACGGCGGCCc- -3'
miRNA:   3'- uuCGGUGUGU---CC-GUG----UGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 32005 0.66 0.807174
Target:  5'- cGAGCCgACGCagaccaggcaGGGgACGCGGCGcuGCCGa -3'
miRNA:   3'- -UUCGG-UGUG----------UCCgUGUGCCGC--UGGUc -5'
10795 3' -58.8 NC_002794.1 + 131182 0.66 0.806308
Target:  5'- cGAGCCggagacaGCAC-GGCGCcgggGCGGCG-CCGGu -3'
miRNA:   3'- -UUCGG-------UGUGuCCGUG----UGCCGCuGGUC- -5'
10795 3' -58.8 NC_002794.1 + 92567 0.66 0.801953
Target:  5'- -cGCCACGCAGGCcuucaaccuggaucuGaacccguaCGCGGUGGCCu- -3'
miRNA:   3'- uuCGGUGUGUCCG---------------U--------GUGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 135302 0.66 0.798443
Target:  5'- cAAGaCACACGGGCACGCcagGGgGugCGa -3'
miRNA:   3'- -UUCgGUGUGUCCGUGUG---CCgCugGUc -5'
10795 3' -58.8 NC_002794.1 + 182499 0.66 0.798443
Target:  5'- gGGGCCGguCAGGUACGCGuaGCGgagcaccguccACCAGc -3'
miRNA:   3'- -UUCGGUguGUCCGUGUGC--CGC-----------UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 79429 0.66 0.798443
Target:  5'- aGGGCCcgGCGgcGGCG-GCGGCGACCGGc -3'
miRNA:   3'- -UUCGGugUGU--CCGUgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 152565 0.67 0.789567
Target:  5'- gGAGCgGCGCuucaccGC-CGCGGCGGCCGc -3'
miRNA:   3'- -UUCGgUGUGuc----CGuGUGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 147698 0.67 0.789567
Target:  5'- cGGCgAUGC-GGCGCACGuGCG-CCAGu -3'
miRNA:   3'- uUCGgUGUGuCCGUGUGC-CGCuGGUC- -5'
10795 3' -58.8 NC_002794.1 + 58642 0.67 0.789567
Target:  5'- -cGCCACGCA---GCugGGCGACgGGc -3'
miRNA:   3'- uuCGGUGUGUccgUGugCCGCUGgUC- -5'
10795 3' -58.8 NC_002794.1 + 58368 0.67 0.789567
Target:  5'- -cGCCGCccgacuuccaGgAGGCGCGCGGgCG-CCAGc -3'
miRNA:   3'- uuCGGUG----------UgUCCGUGUGCC-GCuGGUC- -5'
10795 3' -58.8 NC_002794.1 + 148115 0.67 0.789567
Target:  5'- gAAGCgACGgucgguguCGGGCGCGgGGCcGCCGGg -3'
miRNA:   3'- -UUCGgUGU--------GUCCGUGUgCCGcUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 152988 0.67 0.789567
Target:  5'- -cGCCG-ACAGGCgucguaucuccaGCACGGCgGACUGGg -3'
miRNA:   3'- uuCGGUgUGUCCG------------UGUGCCG-CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 22163 0.67 0.789567
Target:  5'- cGAGUgaGCACcGGCGCuccACGGaCGGCCGGa -3'
miRNA:   3'- -UUCGg-UGUGuCCGUG---UGCC-GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 37823 0.67 0.789567
Target:  5'- -cGCCGuCACGgcgacggcGGCuaACGUGGCGACCAGg -3'
miRNA:   3'- uuCGGU-GUGU--------CCG--UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 135545 0.67 0.789567
Target:  5'- -cGCCgaccgaccgaAUAgGGGCGCAggcCGGCGACCGa -3'
miRNA:   3'- uuCGG----------UGUgUCCGUGU---GCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 76310 0.67 0.786877
Target:  5'- uGGGcCCGCGCcGGCAacCAgucguccucccuccCGGCGGCCGGg -3'
miRNA:   3'- -UUC-GGUGUGuCCGU--GU--------------GCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 185779 0.67 0.780555
Target:  5'- -cGUCACACGucGGCcgGCGCGGgGACCc- -3'
miRNA:   3'- uuCGGUGUGU--CCG--UGUGCCgCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 139499 0.67 0.780555
Target:  5'- cGGGCgCGCuGCA-GCACAUGGCGAugaaCCAGg -3'
miRNA:   3'- -UUCG-GUG-UGUcCGUGUGCCGCU----GGUC- -5'
10795 3' -58.8 NC_002794.1 + 141428 0.67 0.780555
Target:  5'- gGGGCgGCGgGGGCGC-CGGgGgcGCCGGg -3'
miRNA:   3'- -UUCGgUGUgUCCGUGuGCCgC--UGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.