miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 263 0.66 0.807174
Target:  5'- -cGCCGCGCGcgcGGaCGCgaggACGGCGGCCc- -3'
miRNA:   3'- uuCGGUGUGU---CC-GUG----UGCCGCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 376 0.69 0.65489
Target:  5'- cGGCCGCGCGauccccGGCACGCuGCcACCGGu -3'
miRNA:   3'- uUCGGUGUGU------CCGUGUGcCGcUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 1473 0.66 0.832423
Target:  5'- -uGCCaACACuAGGaaguucgAgGCGGCGACCGGc -3'
miRNA:   3'- uuCGG-UGUG-UCCg------UgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 1622 0.68 0.724095
Target:  5'- -cGCC-CACcGGCcugAUACGGgGACCGGg -3'
miRNA:   3'- uuCGGuGUGuCCG---UGUGCCgCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 1685 0.68 0.724095
Target:  5'- -cGCC-CACcGGCcugAUACGGgGACCGGg -3'
miRNA:   3'- uuCGGuGUGuCCG---UGUGCCgCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 2071 0.65 0.839699
Target:  5'- gAAGuCCGagacgacCGCcGGCcuuAUACGGCGACCGGg -3'
miRNA:   3'- -UUC-GGU-------GUGuCCG---UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 2475 0.68 0.733746
Target:  5'- cAAGCgCGCGaGGGCGaucCGGUGGCCGGg -3'
miRNA:   3'- -UUCG-GUGUgUCCGUgu-GCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 8051 0.66 0.824172
Target:  5'- -cGCCGCACcgucuuggcgGGGCGCcaagACGGUguuccccauGGCCAGg -3'
miRNA:   3'- uuCGGUGUG----------UCCGUG----UGCCG---------CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 8111 0.68 0.703591
Target:  5'- -cGCCACcgaGCGGGCgGCGgccuccuCGGUGACCGGc -3'
miRNA:   3'- uuCGGUG---UGUCCG-UGU-------GCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 9063 0.74 0.372222
Target:  5'- cGGUgGCGCAGGCgAUccgagacuuggagaGCGGCGACCGGg -3'
miRNA:   3'- uUCGgUGUGUCCG-UG--------------UGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 12538 0.69 0.634836
Target:  5'- gAAGgaACGCGGcGCGCACGGCuACCGGc -3'
miRNA:   3'- -UUCggUGUGUC-CGUGUGCCGcUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 14479 0.66 0.824172
Target:  5'- -cGCCGCGCucGCuguuCGCGGCGGCg-- -3'
miRNA:   3'- uuCGGUGUGucCGu---GUGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 14601 0.68 0.714368
Target:  5'- cGAGCgCGC-CGGGCACcgcgACGG-GGCCGGa -3'
miRNA:   3'- -UUCG-GUGuGUCCGUG----UGCCgCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 14772 0.69 0.65489
Target:  5'- gAGGCCGCugAGGC---CGGCGagGCCGGc -3'
miRNA:   3'- -UUCGGUGugUCCGuguGCCGC--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 15275 0.7 0.594764
Target:  5'- cGAGCCGCGCGGcucccucCGCGCGaGCGACUAc -3'
miRNA:   3'- -UUCGGUGUGUCc------GUGUGC-CGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 16300 0.68 0.724095
Target:  5'- uAGCCugGC-GGC-CGCGGcCGGCUGGa -3'
miRNA:   3'- uUCGGugUGuCCGuGUGCC-GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 16360 0.73 0.424694
Target:  5'- -cGCCACccGCAcccGcGUGCACGGCGGCCGGg -3'
miRNA:   3'- uuCGGUG--UGU---C-CGUGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 18243 0.67 0.771415
Target:  5'- aAAGCgCGCGC-GGCcgAC-CGGCGACCGc -3'
miRNA:   3'- -UUCG-GUGUGuCCG--UGuGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 18530 0.69 0.674872
Target:  5'- cGGCCgcgaacgcgaGCACGaGCACgGCGGCGACCGc -3'
miRNA:   3'- uUCGG----------UGUGUcCGUG-UGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 19443 0.71 0.535561
Target:  5'- cAGGCCccgaGCGGGCACgagcggcgGCGGCGGCgGGa -3'
miRNA:   3'- -UUCGGug--UGUCCGUG--------UGCCGCUGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.