miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 20984 0.66 0.824172
Target:  5'- cAGCgGCGgcGGCAgcgacCGCGGCGGCCAc -3'
miRNA:   3'- uUCGgUGUguCCGU-----GUGCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 22163 0.67 0.789567
Target:  5'- cGAGUgaGCACcGGCGCuccACGGaCGGCCGGa -3'
miRNA:   3'- -UUCGg-UGUGuCCGUG---UGCC-GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 25129 0.68 0.684817
Target:  5'- cGAGCgggGCACGcGCGCACGGUaGGCCAGc -3'
miRNA:   3'- -UUCGg--UGUGUcCGUGUGCCG-CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 25354 0.66 0.832423
Target:  5'- cAGCCugAC-GGUGCGCGauaGACCGGa -3'
miRNA:   3'- uUCGGugUGuCCGUGUGCcg-CUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 26081 0.66 0.807174
Target:  5'- -cGCCACGCGGGgcaGCGCcgacggccccGGCGAUCGc -3'
miRNA:   3'- uuCGGUGUGUCCg--UGUG----------CCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 26637 0.66 0.815754
Target:  5'- -cGuCCGCGCAccCGgACGGCGGCCGGc -3'
miRNA:   3'- uuC-GGUGUGUccGUgUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 31038 0.75 0.314343
Target:  5'- aGGGCCgACAgauaGGGCagcgGCACGGCGGCCAGc -3'
miRNA:   3'- -UUCGG-UGUg---UCCG----UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 31099 0.65 0.839699
Target:  5'- aAGGCgACguguaaaACAGGUACAUGGCGGaguagagcagcCCGGa -3'
miRNA:   3'- -UUCGgUG-------UGUCCGUGUGCCGCU-----------GGUC- -5'
10795 3' -58.8 NC_002794.1 + 32005 0.66 0.807174
Target:  5'- cGAGCCgACGCagaccaggcaGGGgACGCGGCGcuGCCGa -3'
miRNA:   3'- -UUCGG-UGUG----------UCCgUGUGCCGC--UGGUc -5'
10795 3' -58.8 NC_002794.1 + 32563 0.72 0.487859
Target:  5'- cAGCCGCggAUAGucGCGCGCGGCGguGCCGGg -3'
miRNA:   3'- uUCGGUG--UGUC--CGUGUGCCGC--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 32862 0.66 0.815754
Target:  5'- cGGCCGaGCcGGCGgGCGGCGGCg-- -3'
miRNA:   3'- uUCGGUgUGuCCGUgUGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 32916 0.7 0.56496
Target:  5'- cGGGCgGCAgCAGGUcggcgggaagcGCuCGGCGGCCAGg -3'
miRNA:   3'- -UUCGgUGU-GUCCG-----------UGuGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 33646 0.77 0.261695
Target:  5'- -cGCCGCACGGGCGCGCuGaGCGugCAc -3'
miRNA:   3'- uuCGGUGUGUCCGUGUG-C-CGCugGUc -5'
10795 3' -58.8 NC_002794.1 + 34255 0.75 0.342777
Target:  5'- -uGCCGcCGCAGGCggaccgcGCGCaGGCGGCCAGc -3'
miRNA:   3'- uuCGGU-GUGUCCG-------UGUG-CCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 34722 0.71 0.516262
Target:  5'- -cGCCACG-AGGCGCG-GGCGGCCGc -3'
miRNA:   3'- uuCGGUGUgUCCGUGUgCCGCUGGUc -5'
10795 3' -58.8 NC_002794.1 + 36187 0.75 0.336054
Target:  5'- cGGGCCGCcaGCAugacguGGCACACGGCcACCAGc -3'
miRNA:   3'- -UUCGGUG--UGU------CCGUGUGCCGcUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 36362 0.68 0.714368
Target:  5'- cGGCCAC-CGGGUGCgcgcccGCGGCGAagcggucgacCCAGa -3'
miRNA:   3'- uUCGGUGuGUCCGUG------UGCCGCU----------GGUC- -5'
10795 3' -58.8 NC_002794.1 + 36876 0.66 0.807174
Target:  5'- cAGCCGCGcCAGGUAgCGCGugcagaGCGuCCAGa -3'
miRNA:   3'- uUCGGUGU-GUCCGU-GUGC------CGCuGGUC- -5'
10795 3' -58.8 NC_002794.1 + 37742 0.67 0.780555
Target:  5'- -cGCCGCcgGC-GGCgGCGCGGCGgcGCCGGc -3'
miRNA:   3'- uuCGGUG--UGuCCG-UGUGCCGC--UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 37823 0.67 0.789567
Target:  5'- -cGCCGuCACGgcgacggcGGCuaACGUGGCGACCAGg -3'
miRNA:   3'- uuCGGU-GUGU--------CCG--UGUGCCGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.