miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 3' -58.8 NC_002794.1 + 190978 0.69 0.634836
Target:  5'- cAGCagaGCAGGCAgCGCGGCGACg-- -3'
miRNA:   3'- uUCGgugUGUCCGU-GUGCCGCUGguc -5'
10795 3' -58.8 NC_002794.1 + 190494 0.66 0.832423
Target:  5'- -cGCCGCcCAGGagauacCACGGCGugcCCAGc -3'
miRNA:   3'- uuCGGUGuGUCCgu----GUGCCGCu--GGUC- -5'
10795 3' -58.8 NC_002794.1 + 190009 0.66 0.832423
Target:  5'- cGGCC-CGucCGGGUcCAuCGGCGGCCGGu -3'
miRNA:   3'- uUCGGuGU--GUCCGuGU-GCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 188522 0.72 0.478555
Target:  5'- aAGGCCccgaucucgaaGCGCAGGUGuCGCGGCGGCgGGu -3'
miRNA:   3'- -UUCGG-----------UGUGUCCGU-GUGCCGCUGgUC- -5'
10795 3' -58.8 NC_002794.1 + 187497 0.75 0.314343
Target:  5'- gAGGCCGCGCAGGCGgcCAgGGCGcCCGc -3'
miRNA:   3'- -UUCGGUGUGUCCGU--GUgCCGCuGGUc -5'
10795 3' -58.8 NC_002794.1 + 187143 0.76 0.274148
Target:  5'- uAGCCGCcCAGGUACACGGCGcACguGc -3'
miRNA:   3'- uUCGGUGuGUCCGUGUGCCGC-UGguC- -5'
10795 3' -58.8 NC_002794.1 + 186655 0.69 0.65489
Target:  5'- cGGCCGCGCGcaccccGUACACGGCGcCCGc -3'
miRNA:   3'- uUCGGUGUGUc-----CGUGUGCCGCuGGUc -5'
10795 3' -58.8 NC_002794.1 + 186276 0.72 0.469338
Target:  5'- -cGCCugGCGcGGCgGCACcGCGGCCAGg -3'
miRNA:   3'- uuCGGugUGU-CCG-UGUGcCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 186207 0.67 0.771415
Target:  5'- cGGGCCcCA-GGGCAgAUGGCGGuCCGGg -3'
miRNA:   3'- -UUCGGuGUgUCCGUgUGCCGCU-GGUC- -5'
10795 3' -58.8 NC_002794.1 + 185779 0.67 0.780555
Target:  5'- -cGUCACACGucGGCcgGCGCGGgGACCc- -3'
miRNA:   3'- uuCGGUGUGU--CCG--UGUGCCgCUGGuc -5'
10795 3' -58.8 NC_002794.1 + 185571 0.66 0.824172
Target:  5'- -uGCCGCGgcaGGGCGCGCGGCucuCCc- -3'
miRNA:   3'- uuCGGUGUg--UCCGUGUGCCGcu-GGuc -5'
10795 3' -58.8 NC_002794.1 + 185005 0.79 0.201291
Target:  5'- cGGCCGCccACGGGacucaGCACGGUGACCAGc -3'
miRNA:   3'- uUCGGUG--UGUCCg----UGUGCCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 184590 0.72 0.497248
Target:  5'- cGGCCACGCGcGGC-CGCGGgaucggcaaCGGCCAGc -3'
miRNA:   3'- uUCGGUGUGU-CCGuGUGCC---------GCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 184505 0.7 0.574858
Target:  5'- cGGGCgGCGCGGGCccCGCGcGCGGCgCGGg -3'
miRNA:   3'- -UUCGgUGUGUCCGu-GUGC-CGCUG-GUC- -5'
10795 3' -58.8 NC_002794.1 + 184469 0.74 0.390862
Target:  5'- cGGGCCGCGCGaacGGCGCGCGGgGccCCGGa -3'
miRNA:   3'- -UUCGGUGUGU---CCGUGUGCCgCu-GGUC- -5'
10795 3' -58.8 NC_002794.1 + 183694 0.68 0.684817
Target:  5'- -cGCC-CGCc-GCGCGCGGCGGCaCAGc -3'
miRNA:   3'- uuCGGuGUGucCGUGUGCCGCUG-GUC- -5'
10795 3' -58.8 NC_002794.1 + 183201 0.73 0.416072
Target:  5'- -cGCCACGCcGGCgGCGCGuucgucgccaGCGACCAGg -3'
miRNA:   3'- uuCGGUGUGuCCG-UGUGC----------CGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 182499 0.66 0.798443
Target:  5'- gGGGCCGguCAGGUACGCGuaGCGgagcaccguccACCAGc -3'
miRNA:   3'- -UUCGGUguGUCCGUGUGC--CGC-----------UGGUC- -5'
10795 3' -58.8 NC_002794.1 + 182343 0.69 0.65489
Target:  5'- cGAGCgG-ACGGGCGgGCgGGUGACCGGg -3'
miRNA:   3'- -UUCGgUgUGUCCGUgUG-CCGCUGGUC- -5'
10795 3' -58.8 NC_002794.1 + 182025 0.69 0.634836
Target:  5'- cGGCguC-CGGGcCGC-CGGCGACCAGa -3'
miRNA:   3'- uUCGguGuGUCC-GUGuGCCGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.