miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 179454 0.66 0.866385
Target:  5'- -aCCGCCUcggucgugauguucaGCGCGCACUcgaccgguUGuCGGCCg -3'
miRNA:   3'- uaGGUGGG---------------CGCGCGUGGu-------ACuGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 34863 0.66 0.863482
Target:  5'- ---gGCgCCGCGgGCGCCGcgGACG-CCg -3'
miRNA:   3'- uaggUG-GGCGCgCGUGGUa-CUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 63390 0.66 0.863482
Target:  5'- -gCCGCCC-CGCuGCuccCCGUuucccGACGGCCg -3'
miRNA:   3'- uaGGUGGGcGCG-CGu--GGUA-----CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 60992 0.66 0.863482
Target:  5'- -cCCuCCUGCGCGa--CAUGACGcucACCa -3'
miRNA:   3'- uaGGuGGGCGCGCgugGUACUGC---UGG- -5'
10795 5' -58.8 NC_002794.1 + 76784 0.66 0.863482
Target:  5'- aGUCCGagCCGgGCGgGCgAgcGGCGACCa -3'
miRNA:   3'- -UAGGUg-GGCgCGCgUGgUa-CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 72466 0.66 0.863482
Target:  5'- -cCCGgcCCCGCgGCgGCGCCGaaaaGACGAUCa -3'
miRNA:   3'- uaGGU--GGGCG-CG-CGUGGUa---CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 125215 0.66 0.863482
Target:  5'- -cUCGCCUGCGUGguCCGcGucaucaGCGACCa -3'
miRNA:   3'- uaGGUGGGCGCGCguGGUaC------UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 107761 0.66 0.863482
Target:  5'- -gCCGCUggcuggaGCGCGCucGCCcggcGACGACCg -3'
miRNA:   3'- uaGGUGGg------CGCGCG--UGGua--CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 110243 0.66 0.863482
Target:  5'- cUCCGcggcggagguuuCCCGCGCGgcguCGCgAcGGCGGCCg -3'
miRNA:   3'- uAGGU------------GGGCGCGC----GUGgUaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 102713 0.66 0.85609
Target:  5'- -gCCGCCggaCGgGCGCGCCAacGCGcCCa -3'
miRNA:   3'- uaGGUGG---GCgCGCGUGGUacUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 92083 0.66 0.85609
Target:  5'- -gCCAgUCGUGC-UACCA-GACGGCCu -3'
miRNA:   3'- uaGGUgGGCGCGcGUGGUaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 17433 0.66 0.85609
Target:  5'- cUCCGCgCCGCcgGCGCucggGCCc--GCGACCg -3'
miRNA:   3'- uAGGUG-GGCG--CGCG----UGGuacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 56894 0.66 0.85609
Target:  5'- cAUCCAggugCCGCGCGUgGCCAcgGGCG-CCg -3'
miRNA:   3'- -UAGGUg---GGCGCGCG-UGGUa-CUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 153839 0.66 0.85609
Target:  5'- uGUCCGUgCGCGCGUugccccccGCCGUGcCGGCg -3'
miRNA:   3'- -UAGGUGgGCGCGCG--------UGGUACuGCUGg -5'
10795 5' -58.8 NC_002794.1 + 21964 0.66 0.85609
Target:  5'- -gCCGcuCCCGCG-GCGCCGUcgucuccGCGACCc -3'
miRNA:   3'- uaGGU--GGGCGCgCGUGGUAc------UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 48989 0.66 0.854589
Target:  5'- cUCCAggcCCCGUucgaagcucuccCGCGCCGcGGCGGCCg -3'
miRNA:   3'- uAGGU---GGGCGc-----------GCGUGGUaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 185423 0.66 0.851564
Target:  5'- cGUCgACUCGaCGCgGCGCCAUGcgcggacaggucuccGCGACa -3'
miRNA:   3'- -UAGgUGGGC-GCG-CGUGGUAC---------------UGCUGg -5'
10795 5' -58.8 NC_002794.1 + 145002 0.66 0.848509
Target:  5'- cGUCCGCCUG-GCGCAgCAgcuGCG-CCa -3'
miRNA:   3'- -UAGGUGGGCgCGCGUgGUac-UGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 44529 0.66 0.848509
Target:  5'- uGUCCGCgaGCGCGCcgucgucgucGCCGgcGGCGGCg -3'
miRNA:   3'- -UAGGUGggCGCGCG----------UGGUa-CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 139434 0.66 0.848509
Target:  5'- gGUCuCGugUCCGCGCGCGCCGau-CGGCa -3'
miRNA:   3'- -UAG-GU--GGGCGCGCGUGGUacuGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.