Results 1 - 20 of 258 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10795 | 5' | -58.8 | NC_002794.1 | + | 76926 | 1.1 | 0.001805 |
Target: 5'- gAUCCACCCGCGCGCACCAUGACGACCg -3' miRNA: 3'- -UAGGUGGGCGCGCGUGGUACUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 79097 | 0.85 | 0.084719 |
Target: 5'- -cCCGCCCGCcCGCGCgAUGACGGCCg -3' miRNA: 3'- uaGGUGGGCGcGCGUGgUACUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 81228 | 0.8 | 0.188566 |
Target: 5'- cGUCCccccggGCCgCGCGCGCACCAcgGACGACg -3' miRNA: 3'- -UAGG------UGG-GCGCGCGUGGUa-CUGCUGg -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 114809 | 0.79 | 0.217656 |
Target: 5'- gGUCCcggagGCCCGCGCGCuCUccGGCGGCCg -3' miRNA: 3'- -UAGG-----UGGGCGCGCGuGGuaCUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 112614 | 0.78 | 0.262323 |
Target: 5'- cUCCACCUGCGCGUcguCCAcgGGCGGCUu -3' miRNA: 3'- uAGGUGGGCGCGCGu--GGUa-CUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 82692 | 0.77 | 0.268402 |
Target: 5'- cGUUCGCCCG-GCGCGCCGaGACGcGCCg -3' miRNA: 3'- -UAGGUGGGCgCGCGUGGUaCUGC-UGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 182821 | 0.77 | 0.280903 |
Target: 5'- cGUCCAgCCGCG-GCACCGacACGACCa -3' miRNA: 3'- -UAGGUgGGCGCgCGUGGUacUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 138933 | 0.77 | 0.293861 |
Target: 5'- gGUCUGCCgGUGCGCccccACCGUGGCGugCu -3' miRNA: 3'- -UAGGUGGgCGCGCG----UGGUACUGCugG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 125315 | 0.77 | 0.293861 |
Target: 5'- cGUUCGCCCGCgccgagccggaGCGCGCCAcGGCGcACCg -3' miRNA: 3'- -UAGGUGGGCG-----------CGCGUGGUaCUGC-UGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 24053 | 0.77 | 0.291888 |
Target: 5'- cGUCCGCCCGCcccggaccacacccGUGCGCCcgGGCGGgCg -3' miRNA: 3'- -UAGGUGGGCG--------------CGCGUGGuaCUGCUgG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 128438 | 0.77 | 0.283457 |
Target: 5'- -gUgGCCCGCGCGCAcggcgccuccggagcCCAgGACGACCg -3' miRNA: 3'- uaGgUGGGCGCGCGU---------------GGUaCUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 96356 | 0.76 | 0.314164 |
Target: 5'- gGUCCGCCUGgccgaGgGCACCGUGGCG-CCg -3' miRNA: 3'- -UAGGUGGGCg----CgCGUGGUACUGCuGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 103094 | 0.76 | 0.33551 |
Target: 5'- -gCgGCCCGCGCGCGCgGUcACGACUc -3' miRNA: 3'- uaGgUGGGCGCGCGUGgUAcUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 143566 | 0.76 | 0.314164 |
Target: 5'- -cCCAgCCGUGCGCGCCGUccucGGCGGCg -3' miRNA: 3'- uaGGUgGGCGCGCGUGGUA----CUGCUGg -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 26631 | 0.76 | 0.321163 |
Target: 5'- cGUCCGCgUcCGCGCACCcgGACGGCg -3' miRNA: 3'- -UAGGUGgGcGCGCGUGGuaCUGCUGg -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 115013 | 0.75 | 0.373393 |
Target: 5'- cUCgCACCCGcCGCGCGCCcaccgucugcagGUG-CGACCg -3' miRNA: 3'- uAG-GUGGGC-GCGCGUGG------------UACuGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 46545 | 0.75 | 0.38131 |
Target: 5'- gGUUCugCCGCGCGUACC---GCGACUa -3' miRNA: 3'- -UAGGugGGCGCGCGUGGuacUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 16368 | 0.75 | 0.365588 |
Target: 5'- --gCACCCGCGUGCAC---GGCGGCCg -3' miRNA: 3'- uagGUGGGCGCGCGUGguaCUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 47942 | 0.75 | 0.373393 |
Target: 5'- gAUCgGCgCCGCGCGUcccggcGCCGgcugGGCGACCg -3' miRNA: 3'- -UAGgUG-GGCGCGCG------UGGUa---CUGCUGG- -5' |
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10795 | 5' | -58.8 | NC_002794.1 | + | 35555 | 0.75 | 0.365588 |
Target: 5'- --gCGCUCGCGCGCGCgCGUGGUGGCCc -3' miRNA: 3'- uagGUGGGCGCGCGUG-GUACUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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