miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 76926 1.1 0.001805
Target:  5'- gAUCCACCCGCGCGCACCAUGACGACCg -3'
miRNA:   3'- -UAGGUGGGCGCGCGUGGUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 79097 0.85 0.084719
Target:  5'- -cCCGCCCGCcCGCGCgAUGACGGCCg -3'
miRNA:   3'- uaGGUGGGCGcGCGUGgUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 81228 0.8 0.188566
Target:  5'- cGUCCccccggGCCgCGCGCGCACCAcgGACGACg -3'
miRNA:   3'- -UAGG------UGG-GCGCGCGUGGUa-CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 114809 0.79 0.217656
Target:  5'- gGUCCcggagGCCCGCGCGCuCUccGGCGGCCg -3'
miRNA:   3'- -UAGG-----UGGGCGCGCGuGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 112614 0.78 0.262323
Target:  5'- cUCCACCUGCGCGUcguCCAcgGGCGGCUu -3'
miRNA:   3'- uAGGUGGGCGCGCGu--GGUa-CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 82692 0.77 0.268402
Target:  5'- cGUUCGCCCG-GCGCGCCGaGACGcGCCg -3'
miRNA:   3'- -UAGGUGGGCgCGCGUGGUaCUGC-UGG- -5'
10795 5' -58.8 NC_002794.1 + 182821 0.77 0.280903
Target:  5'- cGUCCAgCCGCG-GCACCGacACGACCa -3'
miRNA:   3'- -UAGGUgGGCGCgCGUGGUacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 128438 0.77 0.283457
Target:  5'- -gUgGCCCGCGCGCAcggcgccuccggagcCCAgGACGACCg -3'
miRNA:   3'- uaGgUGGGCGCGCGU---------------GGUaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 24053 0.77 0.291888
Target:  5'- cGUCCGCCCGCcccggaccacacccGUGCGCCcgGGCGGgCg -3'
miRNA:   3'- -UAGGUGGGCG--------------CGCGUGGuaCUGCUgG- -5'
10795 5' -58.8 NC_002794.1 + 138933 0.77 0.293861
Target:  5'- gGUCUGCCgGUGCGCccccACCGUGGCGugCu -3'
miRNA:   3'- -UAGGUGGgCGCGCG----UGGUACUGCugG- -5'
10795 5' -58.8 NC_002794.1 + 125315 0.77 0.293861
Target:  5'- cGUUCGCCCGCgccgagccggaGCGCGCCAcGGCGcACCg -3'
miRNA:   3'- -UAGGUGGGCG-----------CGCGUGGUaCUGC-UGG- -5'
10795 5' -58.8 NC_002794.1 + 143566 0.76 0.314164
Target:  5'- -cCCAgCCGUGCGCGCCGUccucGGCGGCg -3'
miRNA:   3'- uaGGUgGGCGCGCGUGGUA----CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 96356 0.76 0.314164
Target:  5'- gGUCCGCCUGgccgaGgGCACCGUGGCG-CCg -3'
miRNA:   3'- -UAGGUGGGCg----CgCGUGGUACUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 26631 0.76 0.321163
Target:  5'- cGUCCGCgUcCGCGCACCcgGACGGCg -3'
miRNA:   3'- -UAGGUGgGcGCGCGUGGuaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 103094 0.76 0.33551
Target:  5'- -gCgGCCCGCGCGCGCgGUcACGACUc -3'
miRNA:   3'- uaGgUGGGCGCGCGUGgUAcUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 16368 0.75 0.365588
Target:  5'- --gCACCCGCGUGCAC---GGCGGCCg -3'
miRNA:   3'- uagGUGGGCGCGCGUGguaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 35555 0.75 0.365588
Target:  5'- --gCGCUCGCGCGCGCgCGUGGUGGCCc -3'
miRNA:   3'- uagGUGGGCGCGCGUG-GUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 115013 0.75 0.373393
Target:  5'- cUCgCACCCGcCGCGCGCCcaccgucugcagGUG-CGACCg -3'
miRNA:   3'- uAG-GUGGGC-GCGCGUGG------------UACuGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 47942 0.75 0.373393
Target:  5'- gAUCgGCgCCGCGCGUcccggcGCCGgcugGGCGACCg -3'
miRNA:   3'- -UAGgUG-GGCGCGCG------UGGUa---CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 46545 0.75 0.38131
Target:  5'- gGUUCugCCGCGCGUACC---GCGACUa -3'
miRNA:   3'- -UAGGugGGCGCGCGUGGuacUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.