miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 72703 0.74 0.397476
Target:  5'- gGUCC-CCCGggccgaccacCGUGC-CCAUGACGGCCc -3'
miRNA:   3'- -UAGGuGGGC----------GCGCGuGGUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 10708 0.74 0.397476
Target:  5'- uUCUACUCG-GCGCGCUcgGACGACg -3'
miRNA:   3'- uAGGUGGGCgCGCGUGGuaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 137060 0.74 0.404893
Target:  5'- gAUCUGCCCGUcggcgggcucuucGCGCGCCAUGuCGcCCg -3'
miRNA:   3'- -UAGGUGGGCG-------------CGCGUGGUACuGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 143450 0.74 0.414076
Target:  5'- gGUCacgaGCCCGcCGCGCGCgAUGaACGGCUg -3'
miRNA:   3'- -UAGg---UGGGC-GCGCGUGgUAC-UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 60658 0.74 0.414076
Target:  5'- -gCCACCCgGCGCGCGCCGccGCcGCCu -3'
miRNA:   3'- uaGGUGGG-CGCGCGUGGUacUGcUGG- -5'
10795 5' -58.8 NC_002794.1 + 107530 0.74 0.422535
Target:  5'- -aCgGCCgGCGCgGCGCCGgcggcGACGACCg -3'
miRNA:   3'- uaGgUGGgCGCG-CGUGGUa----CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 45903 0.74 0.431096
Target:  5'- -cCCGCCCGcCGCcgGCACCG-GGCGACg -3'
miRNA:   3'- uaGGUGGGC-GCG--CGUGGUaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 102500 0.73 0.439758
Target:  5'- cGUCCuguugcagcgGCUgGCGCGCGCgCggGACGACCu -3'
miRNA:   3'- -UAGG----------UGGgCGCGCGUG-GuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 319 0.73 0.466324
Target:  5'- -cCCACCCccacGCGCGCGCCGccGACaGCCc -3'
miRNA:   3'- uaGGUGGG----CGCGCGUGGUa-CUGcUGG- -5'
10795 5' -58.8 NC_002794.1 + 90214 0.73 0.475362
Target:  5'- cUCCGCCCGC-CGCGCCGgagccccgccUGugGuCCc -3'
miRNA:   3'- uAGGUGGGCGcGCGUGGU----------ACugCuGG- -5'
10795 5' -58.8 NC_002794.1 + 23602 0.73 0.475362
Target:  5'- gAUCCGccgacccgacCCCGCGgGCGCCcgGACGcgcgGCCc -3'
miRNA:   3'- -UAGGU----------GGGCGCgCGUGGuaCUGC----UGG- -5'
10795 5' -58.8 NC_002794.1 + 8818 0.72 0.493696
Target:  5'- -gCC-CCCGCGCGUcggaCGUGAgGACCa -3'
miRNA:   3'- uaGGuGGGCGCGCGug--GUACUgCUGG- -5'
10795 5' -58.8 NC_002794.1 + 61847 0.72 0.512346
Target:  5'- cUCCGCUC-CGCGCcCCAUGgACGACg -3'
miRNA:   3'- uAGGUGGGcGCGCGuGGUAC-UGCUGg -5'
10795 5' -58.8 NC_002794.1 + 33541 0.72 0.512346
Target:  5'- -gCCACCCaGCugGUGCGCCAgaaccugcUGACGAUCg -3'
miRNA:   3'- uaGGUGGG-CG--CGCGUGGU--------ACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 68288 0.72 0.52178
Target:  5'- -gCCAgCCGgGCGUACgaacgccuCGUGGCGGCCg -3'
miRNA:   3'- uaGGUgGGCgCGCGUG--------GUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 189922 0.72 0.52178
Target:  5'- -aCCGCCCGCuCGC-CC--GACGGCCg -3'
miRNA:   3'- uaGGUGGGCGcGCGuGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 180633 0.72 0.52178
Target:  5'- -cCCACCCGCGCu--CCA-GACGACg -3'
miRNA:   3'- uaGGUGGGCGCGcguGGUaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 67550 0.72 0.52178
Target:  5'- cUCCGCCCGgGcCGCGCCGcaccaaaGcCGACCg -3'
miRNA:   3'- uAGGUGGGCgC-GCGUGGUa------CuGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 34778 0.72 0.531281
Target:  5'- -gCCGCCCGCGCcaGCCGaGuCGGCCg -3'
miRNA:   3'- uaGGUGGGCGCGcgUGGUaCuGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 149408 0.72 0.531281
Target:  5'- -gCCGCgCGUGUGUGCCGUGugGugUg -3'
miRNA:   3'- uaGGUGgGCGCGCGUGGUACugCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.