miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 94029 0.66 0.848509
Target:  5'- uUCCGCCgGCGgGC-CCGagagcGGCGGCg -3'
miRNA:   3'- uAGGUGGgCGCgCGuGGUa----CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 139434 0.66 0.848509
Target:  5'- gGUCuCGugUCCGCGCGCGCCGau-CGGCa -3'
miRNA:   3'- -UAG-GU--GGGCGCGCGUGGUacuGCUGg -5'
10795 5' -58.8 NC_002794.1 + 193574 0.66 0.848509
Target:  5'- uUCCAUCa-CGCGC-CgGUGGCGGCUc -3'
miRNA:   3'- uAGGUGGgcGCGCGuGgUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 145002 0.66 0.848509
Target:  5'- cGUCCGCCUG-GCGCAgCAgcuGCG-CCa -3'
miRNA:   3'- -UAGGUGGGCgCGCGUgGUac-UGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 44529 0.66 0.848509
Target:  5'- uGUCCGCgaGCGCGCcgucgucgucGCCGgcGGCGGCg -3'
miRNA:   3'- -UAGGUGggCGCGCG----------UGGUa-CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 43673 0.66 0.843873
Target:  5'- cUCUcggGCCCGgGCGCGgaccaugccggagauCCAgguggUGAUGACCg -3'
miRNA:   3'- uAGG---UGGGCgCGCGU---------------GGU-----ACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 59498 0.66 0.840746
Target:  5'- -aCUACCUGCGC-CACgAcGGCGGCUu -3'
miRNA:   3'- uaGGUGGGCGCGcGUGgUaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 69014 0.66 0.840746
Target:  5'- cUCCGCgUGCGCGaCGCC--GGCGcCCu -3'
miRNA:   3'- uAGGUGgGCGCGC-GUGGuaCUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 2468 0.66 0.840746
Target:  5'- -aCCACCUcaaGCGCGCGag--GGCGAUCc -3'
miRNA:   3'- uaGGUGGG---CGCGCGUgguaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 102174 0.66 0.840746
Target:  5'- -gCCAUCgugGCGCGCGgCGaggaccUGGCGGCCg -3'
miRNA:   3'- uaGGUGGg--CGCGCGUgGU------ACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 108417 0.66 0.840746
Target:  5'- -cCCACCacgGCGCcCACCcc-GCGACCg -3'
miRNA:   3'- uaGGUGGg--CGCGcGUGGuacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 99895 0.66 0.840746
Target:  5'- gAUCCACCCGgGCuaccGCcaccggaucacGCCGUG-CGGCg -3'
miRNA:   3'- -UAGGUGGGCgCG----CG-----------UGGUACuGCUGg -5'
10795 5' -58.8 NC_002794.1 + 187267 0.66 0.840746
Target:  5'- -gCCGCUCGCGCGUcucgaacaccgcGCCG-GACGgggucACCa -3'
miRNA:   3'- uaGGUGGGCGCGCG------------UGGUaCUGC-----UGG- -5'
10795 5' -58.8 NC_002794.1 + 107209 0.66 0.840746
Target:  5'- -cUCGCCCgGCGC-CGCCG-GGCGGCg -3'
miRNA:   3'- uaGGUGGG-CGCGcGUGGUaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 183012 0.66 0.840746
Target:  5'- --gCGcCCCGCGCGCGCCcgccgccccgGACGAa- -3'
miRNA:   3'- uagGU-GGGCGCGCGUGGua--------CUGCUgg -5'
10795 5' -58.8 NC_002794.1 + 192649 0.66 0.840746
Target:  5'- -gCCGCgCCGcCGCGCGCUcgcGCGACUc -3'
miRNA:   3'- uaGGUG-GGC-GCGCGUGGuacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 113207 0.66 0.83996
Target:  5'- -gCCGCCacCGC-CGCcuccuccGCCcgGGCGACCg -3'
miRNA:   3'- uaGGUGG--GCGcGCG-------UGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 34259 0.66 0.83996
Target:  5'- -gCCGCaggcggaCCGCGCGCaggcgGCCAgcgccaGCGACCg -3'
miRNA:   3'- uaGGUG-------GGCGCGCG-----UGGUac----UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 144953 0.66 0.83996
Target:  5'- -aCCACCUGUGUcuccucgGCGCCucgacgGUGucGCGACCg -3'
miRNA:   3'- uaGGUGGGCGCG-------CGUGG------UAC--UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 73850 0.66 0.838382
Target:  5'- cUCUACgCGCucauggucuucgucGCGgACCggGACGACCc -3'
miRNA:   3'- uAGGUGgGCG--------------CGCgUGGuaCUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.