miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 1253 0.66 0.832806
Target:  5'- -gCCGCCCggaggccaGUGUGCGCCAgccacCGGCCu -3'
miRNA:   3'- uaGGUGGG--------CGCGCGUGGUacu--GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 64066 0.66 0.832806
Target:  5'- cUCCACCCGacccugcacuaCGUGaccaaaguCACCGUGcagacGCGACCg -3'
miRNA:   3'- uAGGUGGGC-----------GCGC--------GUGGUAC-----UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 130474 0.66 0.832806
Target:  5'- -gCgGCuuGCGUGCGCgaCAUGAUGGCg -3'
miRNA:   3'- uaGgUGggCGCGCGUG--GUACUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 111638 0.66 0.832806
Target:  5'- -gCCGCCgGuCGgGCGCCGcgGccGCGGCCa -3'
miRNA:   3'- uaGGUGGgC-GCgCGUGGUa-C--UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 8919 0.66 0.832806
Target:  5'- -cCCAagcagguggCCGUGCGCACC-UGcACGAUCg -3'
miRNA:   3'- uaGGUg--------GGCGCGCGUGGuAC-UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 179676 0.66 0.832806
Target:  5'- --gCACCCGCgGCgGCgACgGUGGCGGCg -3'
miRNA:   3'- uagGUGGGCG-CG-CG-UGgUACUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 26175 0.66 0.832806
Target:  5'- -cCCAgcUCCGCGCGggaGCgGUGACGAUUu -3'
miRNA:   3'- uaGGU--GGGCGCGCg--UGgUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 58540 0.66 0.832806
Target:  5'- cUUCGCCgcggCGCGCGCGCUGcUGGCGcGCUg -3'
miRNA:   3'- uAGGUGG----GCGCGCGUGGU-ACUGC-UGG- -5'
10795 5' -58.8 NC_002794.1 + 187912 0.66 0.832806
Target:  5'- -cUCGCCCGcCGgGCcCCGccGCGACCg -3'
miRNA:   3'- uaGGUGGGC-GCgCGuGGUacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 128665 0.66 0.832806
Target:  5'- -aCCGgCCGCGCGaauaauCGCCGcGGCGGuCCg -3'
miRNA:   3'- uaGGUgGGCGCGC------GUGGUaCUGCU-GG- -5'
10795 5' -58.8 NC_002794.1 + 179113 0.66 0.832806
Target:  5'- cGUCCGCgguCCGgGCGCGCgGUcGGuCGAUCg -3'
miRNA:   3'- -UAGGUG---GGCgCGCGUGgUA-CU-GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 131483 0.66 0.832806
Target:  5'- -cUCGCCCGUGUuagGCACCggGcccgucaucACGACCu -3'
miRNA:   3'- uaGGUGGGCGCG---CGUGGuaC---------UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 131447 0.66 0.832806
Target:  5'- -cUCGCCCGUGUuagGCACCggGcccgucaucACGACCu -3'
miRNA:   3'- uaGGUGGGCGCG---CGUGGuaC---------UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 111986 0.66 0.832806
Target:  5'- gGUCCACCggcacgcccUGCGCGguCACCAgucGGCG-CCg -3'
miRNA:   3'- -UAGGUGG---------GCGCGC--GUGGUa--CUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 97321 0.66 0.832003
Target:  5'- -gCUACUcgaguuaCGUGCGCACCAUcGgGACCg -3'
miRNA:   3'- uaGGUGG-------GCGCGCGUGGUAcUgCUGG- -5'
10795 5' -58.8 NC_002794.1 + 147019 0.66 0.830391
Target:  5'- -gCCGCCgGCGCuCggucuaaggacgaaGCCGUcGGCGGCCg -3'
miRNA:   3'- uaGGUGGgCGCGcG--------------UGGUA-CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 184461 0.67 0.82796
Target:  5'- -gCCGCCCGCgggccGCGCGaacggcgcgcggggcCCcgGACGcCCg -3'
miRNA:   3'- uaGGUGGGCG-----CGCGU---------------GGuaCUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 193396 0.67 0.824696
Target:  5'- cGUCCGCCuCGCGCuCGCCuccGCcGCCg -3'
miRNA:   3'- -UAGGUGG-GCGCGcGUGGuacUGcUGG- -5'
10795 5' -58.8 NC_002794.1 + 51208 0.67 0.824696
Target:  5'- -cUCGCCCGCGgaGCGgCcgGcCGGCCg -3'
miRNA:   3'- uaGGUGGGCGCg-CGUgGuaCuGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 99548 0.67 0.824696
Target:  5'- -gCCGCggaaaCCGCGCGCGCCcuccgcgGGCGAg- -3'
miRNA:   3'- uaGGUG-----GGCGCGCGUGGua-----CUGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.