miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 261 0.69 0.697553
Target:  5'- -gCCGCCgCGCGCGCggacGCgAggacGGCGGCCc -3'
miRNA:   3'- uaGGUGG-GCGCGCG----UGgUa---CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 319 0.73 0.466324
Target:  5'- -cCCACCCccacGCGCGCGCCGccGACaGCCc -3'
miRNA:   3'- uaGGUGGG----CGCGCGUGGUa-CUGcUGG- -5'
10795 5' -58.8 NC_002794.1 + 855 0.7 0.628804
Target:  5'- uUCgGCCCaGCGCGCGCCcgcgaggcgGUcGGCGugCg -3'
miRNA:   3'- uAGgUGGG-CGCGCGUGG---------UA-CUGCugG- -5'
10795 5' -58.8 NC_002794.1 + 1253 0.66 0.832806
Target:  5'- -gCCGCCCggaggccaGUGUGCGCCAgccacCGGCCu -3'
miRNA:   3'- uaGGUGGG--------CGCGCGUGGUacu--GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 2468 0.66 0.840746
Target:  5'- -aCCACCUcaaGCGCGCGag--GGCGAUCc -3'
miRNA:   3'- uaGGUGGG---CGCGCGUgguaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 4027 0.68 0.726407
Target:  5'- -aCCGCCCcaucccgaGCGaccgGCAUCAUGAgCGACCc -3'
miRNA:   3'- uaGGUGGG--------CGCg---CGUGGUACU-GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 8818 0.72 0.493696
Target:  5'- -gCC-CCCGCGCGUcggaCGUGAgGACCa -3'
miRNA:   3'- uaGGuGGGCGCGCGug--GUACUgCUGG- -5'
10795 5' -58.8 NC_002794.1 + 8919 0.66 0.832806
Target:  5'- -cCCAagcagguggCCGUGCGCACC-UGcACGAUCg -3'
miRNA:   3'- uaGGUg--------GGCGCGCGUGGuAC-UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 10708 0.74 0.397476
Target:  5'- uUCUACUCG-GCGCGCUcgGACGACg -3'
miRNA:   3'- uAGGUGGGCgCGCGUGGuaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 12353 0.67 0.78185
Target:  5'- -gUCACCCGCGUcacGUACCucGGCGugCu -3'
miRNA:   3'- uaGGUGGGCGCG---CGUGGuaCUGCugG- -5'
10795 5' -58.8 NC_002794.1 + 12383 0.67 0.790701
Target:  5'- -gCCugCCGCGCuCGCC-UGGcCGACa -3'
miRNA:   3'- uaGGugGGCGCGcGUGGuACU-GCUGg -5'
10795 5' -58.8 NC_002794.1 + 12453 0.69 0.707233
Target:  5'- --gCGCCCGCcucaCGUACCugcccGACGACCg -3'
miRNA:   3'- uagGUGGGCGc---GCGUGGua---CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 12767 0.68 0.745279
Target:  5'- cUCUugCCGcCGcCGCGCUucggcgagaacGUGACGAUCg -3'
miRNA:   3'- uAGGugGGC-GC-GCGUGG-----------UACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 14502 0.7 0.609073
Target:  5'- -gCgGCCCGCGCucgcgGCGCuCGUGGCG-CCg -3'
miRNA:   3'- uaGgUGGGCGCG-----CGUG-GUACUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 14576 0.68 0.754581
Target:  5'- -gCCGgCCGaccgaaGCGgGCCGUGGCGAgCg -3'
miRNA:   3'- uaGGUgGGCg-----CGCgUGGUACUGCUgG- -5'
10795 5' -58.8 NC_002794.1 + 15304 0.7 0.658402
Target:  5'- -aCUACUCGCGCGC-CCAucccgcaggUGACGuguCCg -3'
miRNA:   3'- uaGGUGGGCGCGCGuGGU---------ACUGCu--GG- -5'
10795 5' -58.8 NC_002794.1 + 16368 0.75 0.365588
Target:  5'- --gCACCCGCGUGCAC---GGCGGCCg -3'
miRNA:   3'- uagGUGGGCGCGCGUGguaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 17433 0.66 0.85609
Target:  5'- cUCCGCgCCGCcgGCGCucggGCCc--GCGACCg -3'
miRNA:   3'- uAGGUG-GGCG--CGCG----UGGuacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 17953 0.71 0.569852
Target:  5'- -gCCACCCGCGacuCGCccggGCCGUGAgccuggcgcccaCGGCCg -3'
miRNA:   3'- uaGGUGGGCGC---GCG----UGGUACU------------GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 18632 0.71 0.569852
Target:  5'- cUCCgacGCCCGCuccGCcgGCACCcggGACGACCg -3'
miRNA:   3'- uAGG---UGGGCG---CG--CGUGGua-CUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.