miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 19315 0.69 0.668238
Target:  5'- -aCCGCCCaCGcCGCGCU--GGCGACCc -3'
miRNA:   3'- uaGGUGGGcGC-GCGUGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 19405 0.67 0.78185
Target:  5'- -cCCACCCGacccggaucggGCGCGCCcuccuccGCGACCa -3'
miRNA:   3'- uaGGUGGGCg----------CGCGUGGuac----UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 19804 0.68 0.735885
Target:  5'- cUCCGCUCGgacCGCGCGCCG-GACugGAUCa -3'
miRNA:   3'- uAGGUGGGC---GCGCGUGGUaCUG--CUGG- -5'
10795 5' -58.8 NC_002794.1 + 20424 0.67 0.807995
Target:  5'- gGUCUACCC---CGCGCCGgagGACGugCa -3'
miRNA:   3'- -UAGGUGGGcgcGCGUGGUa--CUGCugG- -5'
10795 5' -58.8 NC_002794.1 + 21454 0.71 0.569852
Target:  5'- -gUCGCUCG-GCGuCGCCGUGACGGCa -3'
miRNA:   3'- uaGGUGGGCgCGC-GUGGUACUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 21613 0.67 0.790701
Target:  5'- -cCCACCgCGC-CGuCGCCGggagGACGACg -3'
miRNA:   3'- uaGGUGG-GCGcGC-GUGGUa---CUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 21964 0.66 0.85609
Target:  5'- -gCCGcuCCCGCG-GCGCCGUcgucuccGCGACCc -3'
miRNA:   3'- uaGGU--GGGCGCgCGUGGUAc------UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 22770 0.68 0.772875
Target:  5'- -aCgACCgCGaCGCGCGuuGUGAcCGACCg -3'
miRNA:   3'- uaGgUGG-GC-GCGCGUggUACU-GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 23602 0.73 0.475362
Target:  5'- gAUCCGccgacccgacCCCGCGgGCGCCcgGACGcgcgGCCc -3'
miRNA:   3'- -UAGGU----------GGGCGCgCGUGGuaCUGC----UGG- -5'
10795 5' -58.8 NC_002794.1 + 23713 0.67 0.78185
Target:  5'- cGUCCcgaaCCGCGCGCGgCGggcccGACGuACCu -3'
miRNA:   3'- -UAGGug--GGCGCGCGUgGUa----CUGC-UGG- -5'
10795 5' -58.8 NC_002794.1 + 24053 0.77 0.291888
Target:  5'- cGUCCGCCCGCcccggaccacacccGUGCGCCcgGGCGGgCg -3'
miRNA:   3'- -UAGGUGGGCG--------------CGCGUGGuaCUGCUgG- -5'
10795 5' -58.8 NC_002794.1 + 24220 0.67 0.790701
Target:  5'- -cUCACCCGUGUccguccaccCACCccGACGACCc -3'
miRNA:   3'- uaGGUGGGCGCGc--------GUGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 26069 0.68 0.767433
Target:  5'- -cCCcCCCGCGCacgccacgcggggcaGCGCC--GACGGCCc -3'
miRNA:   3'- uaGGuGGGCGCG---------------CGUGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 26175 0.66 0.832806
Target:  5'- -cCCAgcUCCGCGCGggaGCgGUGACGAUUu -3'
miRNA:   3'- uaGGU--GGGCGCGCg--UGgUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 26631 0.76 0.321163
Target:  5'- cGUCCGCgUcCGCGCACCcgGACGGCg -3'
miRNA:   3'- -UAGGUGgGcGCGCGUGGuaCUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 27599 0.67 0.78185
Target:  5'- uAUCCAUCCGacCGUcCACCcggucgGACGGCCg -3'
miRNA:   3'- -UAGGUGGGC--GCGcGUGGua----CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 30394 0.7 0.648546
Target:  5'- -gCCGCCCGCGaCGUgauGCCGUGGuCGAa- -3'
miRNA:   3'- uaGGUGGGCGC-GCG---UGGUACU-GCUgg -5'
10795 5' -58.8 NC_002794.1 + 30558 0.71 0.560134
Target:  5'- gAUCCgcGCCCGCucguuCGuCAgCGUGACGACCu -3'
miRNA:   3'- -UAGG--UGGGCGc----GC-GUgGUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 32297 0.66 0.848509
Target:  5'- -gCCGCcgCCGCGgcggcCGCGCCGgccGCGGCCg -3'
miRNA:   3'- uaGGUG--GGCGC-----GCGUGGUac-UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 32446 0.67 0.790701
Target:  5'- gAUCa--CCGuCGUGC-CCGUGACGACg -3'
miRNA:   3'- -UAGgugGGC-GCGCGuGGUACUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.